JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HLA-A_chr6_29937532_29950870	0/0	a0034	365	2	1	0	0	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0035	365	1	0	0	0	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0036	365	1	1	0	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0037	365	1	0	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0038	365	1	0	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0039	365	1	0	0	1	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0040	365	1	0	0	1	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0041	365	1	0	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0042	365	1	1	0	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0043	365	1	0	0	1	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-B_chr6_31348875_31362179	0/0	a0001	362	32	2	5	16	2	7	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0002	362	31	3	2	21	0	5	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0003	362	31	9	4	17	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0004	362	27	3	6	14	1	3	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	1/0	a0005	362	26	4	7	13	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0006	362	22	0	4	18	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0007	362	17	1	2	14	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0008	362	16	0	1	11	2	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0009	362	15	0	0	11	0	4	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0010	362	14	4	4	0	2	4	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0011	362	13	0	0	13	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0012	362	12	9	3	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0013	362	10	3	0	5	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0014	362	9	0	0	9	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0015	362	9	1	6	0	2	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0016	362	8	1	1	6	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0017	362	8	0	1	5	2	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0018	362	8	4	2	0	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0019	362	7	0	3	1	2	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0020	362	7	0	0	3	1	3	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0021	362	7	6	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0022	362	6	6	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/1	a0023	362	5	0	0	2	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0024	362	5	3	1	0	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0025	362	5	3	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0026	362	5	0	0	4	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0027	362	4	1	3	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0028	362	4	0	0	4	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0029	362	4	0	0	4	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0030	362	4	0	0	3	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0031	362	4	0	0	4	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0032	362	4	4	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0033	362	4	1	0	1	1	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0034	362	4	1	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0035	362	4	4	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0036	362	4	3	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0037	362	3	0	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0038	362	3	0	2	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0039	362	3	0	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0040	362	3	3	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179