JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HLA-B_chr6_31348875_31362179	0/0	a0041	362	3	0	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0042	362	3	0	0	0	0	3	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0043	362	3	3	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0044	362	2	0	1	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0045	362	2	0	0	2	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0046	362	2	2	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0047	362	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0048	362	2	0	0	2	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0049	362	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0050	362	2	0	0	2	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0051	362	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0052	362	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0053	362	2	0	0	1	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0054	362	2	0	1	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0055	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0056	362	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0057	362	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0058	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0059	362	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0060	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0061	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0062	362	1	0	0	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0063	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0064	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0065	362	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0066	362	1	0	0	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0067	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0068	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0069	362	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0070	362	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0071	362	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0072	362	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0073	362	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0074	362	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0075	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0076	362	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0077	362	1	0	0	0	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0078	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0079	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0080	362	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0081	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0082	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0083	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	a0084	362	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-C_chr6_31263749_31277092	0/0	a0001	366	54	5	11	31	2	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0002	366	37	14	11	9	0	3	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0003	366	37	5	7	21	2	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0004	366	36	0	3	27	1	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0005	366	34	0	2	30	1	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0006	366	25	0	0	20	0	5	copy fasta	HLA-C	chr6	31263749	31277092