JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HLA-C_chr6_31263749_31277092	0/1	a0007	366	23	6	2	7	2	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0008	366	21	14	5	0	2	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0009	366	19	0	0	18	0	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0010	366	18	7	7	0	2	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0011	366	18	3	0	13	1	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0012	366	15	0	6	5	0	4	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0013	366	14	11	3	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0014	366	12	0	0	12	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0015	366	12	1	8	1	0	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0016	366	12	3	0	7	0	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0017	372	9	9	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0018	366	8	0	5	1	1	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0019	366	5	2	0	2	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0020	366	5	0	0	0	0	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0021	366	5	1	3	0	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0022	366	5	3	2	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0023	366	3	3	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0024	366	3	3	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0025	366	3	0	0	3	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0026	366	2	0	1	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0027	366	2	0	0	0	0	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0028	366	2	0	2	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0029	366	2	1	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0030	372	1	1	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0031	366	1	1	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0032	178	1	0	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0033	366	1	0	0	0	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0034	366	1	1	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0035	366	1	0	0	0	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0036	366	1	0	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	a0037	366	1	0	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-DMA_chr6_32943618_32958097	0/0	a0001	261	374	81	70	176	17	30	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	a0002	261	66	3	13	35	1	14	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	a0003	261	3	0	2	1	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	a0004	261	1	0	1	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	a0005	261	1	1	0	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	a0006	261	1	1	0	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMB_chr6_32929636_32946028	0/0	a0001	263	271	64	60	105	10	32	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/1	a0002	263	121	23	21	64	3	9	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	a0003	263	50	1	1	43	1	4	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	a0004	263	5	0	3	0	2	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	a0005	263	3	0	2	1	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	a0006	263	1	0	0	1	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	a0007	263	1	0	0	0	0	1	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	a0008	263	1	0	1	0	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DOA_chr6_32999182_33014591	0/1	a0001	250	459	96	79	223	17	43	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	a0002	250	4	0	3	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	a0003	250	4	0	0	0	0	4	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	a0004	250	2	0	0	0	0	2	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	a0005	250	2	0	0	0	1	1	copy fasta	HLA-DOA	chr6	32999182	33014591