JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HLA-DOB_chr6_32807763_32822002	0/0	a0001	273	340	48	69	175	15	33	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/1	a0002	273	66	18	4	36	1	6	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	a0003	273	28	15	2	10	1	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	a0004	273	13	3	9	0	1	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	a0005	273	10	0	2	1	0	7	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	a0006	273	1	1	0	0	0	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	a0007	273	1	1	0	0	0	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DPA1_chr6_33059569_33078649	0/1	a0001	260	91	9	36	24	10	11	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	a0002	260	13	9	4	0	0	0	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	a0003	260	1	0	0	0	0	1	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPB1_chr6_33070990_33094696	0/0	a0000	0	33	10	8	8	2	5	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0001	258	87	0	3	84	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0002	258	73	16	9	43	1	4	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/1	a0003	258	53	4	19	9	7	13	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0004	258	43	1	15	16	3	8	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0005	258	41	34	4	0	2	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0006	258	23	0	0	20	0	3	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0007	258	19	14	5	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0008	258	17	0	2	13	2	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0009	258	13	0	6	2	0	5	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0010	258	11	0	3	8	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0011	258	9	2	0	4	0	3	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0012	258	8	8	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0013	258	6	3	0	2	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0014	258	2	1	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0015	258	2	0	1	1	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0016	258	2	0	0	2	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0017	258	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0018	258	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0019	258	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0020	258	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0021	258	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0022	258	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0023	258	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0024	258	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0025	258	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0026	258	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0027	258	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0028	258	1	0	0	0	1	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	a0029	258	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DQA1_chr6_32632406_32648684	1/0	a0001	255	46	15	5	17	2	6	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	a0002	255	25	3	4	14	0	4	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	a0003	255	7	2	2	3	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	a0004	255	5	0	0	5	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	a0005	255	2	0	1	1	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/1	a0006	255	1	0	0	0	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA2_chr6_32736391_32752198	0/1	a0001	255	349	56	63	185	13	31	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	a0002	255	32	0	0	25	0	7	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	a0003	255	29	10	16	0	3	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	a0004	255	15	2	1	6	0	6	copy fasta	HLA-DQA2	chr6	32736391	32752198