Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCA7_chr19_1035107_1070572	0/0	a0005	2146	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0006	2146	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0007	2146	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0008	2146	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0009	2146	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0010	2146	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0011	2146	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0012	2146	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0013	2146	1	0	0	0	0	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0014	2146	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0015	2146	1	0	0	0	0	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0016	2146	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0017	2146	1	0	1	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0018	2146	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	a0019	2146	1	0	0	0	0	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA8_chr17_68862289_68960392	1/1	a0001	1621	199	37	28	96	11	25	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0002	1621	13	4	3	6	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0003	1621	9	0	0	9	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0004	1621	9	8	1	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0005	1621	6	6	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0006	1621	4	0	1	0	2	1	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0007	1621	3	3	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0008	1621	3	2	1	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0009	1621	3	3	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0010	1621	2	2	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0011	1621	2	0	0	2	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0012	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0013	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0014	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0015	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0016	1621	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0017	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0018	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0019	1621	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0020	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0021	1621	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0022	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0023	1621	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0024	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0025	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0026	1621	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0027	1621	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0028	1621	1	0	0	0	1	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0029	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0030	1617	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0031	1621	1	1	0	0	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA8_chr17_68862289_68960392	0/0	a0032	1621	1	0	0	1	0	0	copy fasta	ABCA8	chr17	68862289	68960392
ABCA9_chr17_68969488_69065927	0/0	a0001	1624	108	23	11	52	8	14	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/1	a0002	1624	108	10	21	57	6	13	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	1/0	a0003	1624	34	23	3	0	0	7	copy fasta	ABCA9	chr17	68969488	69065927