Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALG13_chrX_111676170_111765649	0/0	a0011	66	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG14_chr1_94969405_95077951	1/1	a0001	216	387	90	74	173	14	34	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	a0002	216	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG1L2_chr3_130076831_130103390	1/0	a0001	215	205	37	16	137	2	12	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	a0002	160	42	18	11	1	6	6	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	a0003	160	7	6	1	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	a0004	215	2	0	0	2	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	a0005	160	2	2	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	a0006	215	1	0	0	1	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	a0007	215	1	0	0	1	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	a0008	215	1	1	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1_chr16_5066843_5092379	1/1	a0001	464	315	78	50	136	11	38	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0002	464	71	19	22	26	1	3	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0003	464	51	1	13	35	0	2	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0004	464	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0005	464	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0006	464	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0007	464	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0008	464	1	0	1	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0009	265	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	a0010	464	1	0	0	0	0	1	copy fasta	ALG1	chr16	5066843	5092379
ALG2_chr9_99211425_99226942	1/1	a0001	416	358	82	68	150	17	39	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	a0002	416	9	0	5	2	1	1	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	a0003	416	5	3	0	0	0	2	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	a0004	416	1	0	1	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	a0005	416	1	1	0	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	a0006	416	1	0	1	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	a0007	416	1	0	1	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG3_chr3_184237301_184253962	1/1	a0001	438	334	89	63	135	16	29	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	a0002	438	1	0	0	0	0	1	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	a0003	438	1	0	0	1	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	a0004	438	1	1	0	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	a0005	438	1	1	0	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	a0006	438	1	1	0	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	a0007	438	1	0	1	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG5_chr13_36944738_37004340	1/1	a0001	324	269	86	65	78	12	26	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	a0002	324	3	2	0	1	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	a0003	324	2	2	0	0	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	a0004	324	1	0	1	0	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	a0005	324	1	0	0	1	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG6_chr1_63362627_63443553	0/0	a0001	507	307	75	44	145	7	36	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	1/1	a0002	507	74	9	16	37	3	7	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	a0003	507	4	0	4	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	a0004	507	1	1	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	a0005	507	1	0	0	0	0	1	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	a0006	507	1	1	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG8_chr11_78095946_78144626	1/0	a0001	526	338	77	55	161	8	36	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/1	a0002	526	53	4	16	23	4	5	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	a0003	526	5	5	0	0	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	a0004	526	2	0	2	0	0	0	copy fasta	ALG8	chr11	78095946	78144626