JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HLA-DQA2_chr6_32736391_32752198	0/0	a0005	255	13	12	1	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	a0006	255	12	11	1	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	a0007	255	2	2	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	a0008	255	1	0	0	1	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	a0009	255	1	0	0	1	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	a0010	255	1	1	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQB1_chr6_32654467_32671657	0/0	a0001	261	52	0	11	36	1	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/1	a0002	261	51	10	9	25	5	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0003	261	45	0	0	36	0	9	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0004	261	43	5	15	20	0	3	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0005	261	41	13	8	16	2	2	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	1/0	a0006	261	40	15	6	15	2	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0007	261	21	4	1	14	1	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0008	261	19	3	9	1	3	3	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0009	261	17	0	0	17	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0010	261	17	3	4	9	0	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0011	261	16	1	1	10	0	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0012	261	11	10	1	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0013	261	11	1	0	6	0	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0014	261	10	3	5	1	0	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0015	261	6	1	1	4	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0016	261	1	0	1	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	a0017	261	1	1	0	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB2_chr6_32751098_32768532	0/1	a0001	264	299	54	55	148	10	31	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	a0002	264	105	28	25	42	5	5	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	a0003	264	36	2	0	27	0	7	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	a0004	264	6	6	0	0	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	a0005	264	5	0	0	2	0	3	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	a0006	264	2	1	0	0	1	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	a0007	264	1	0	0	1	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	a0008	264	1	1	0	0	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DRA_chr6_32434887_32450046	0/1	a0001	254	287	54	60	128	8	36	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	a0002	254	152	33	22	82	7	8	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	a0003	254	19	5	0	14	0	0	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	a0004	254	1	0	0	0	1	0	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRB1_chr6_32573775_32594848	0/0	a0001	266	22	0	0	18	0	4	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0002	266	19	5	2	10	1	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0003	266	19	3	9	0	4	3	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0004	266	17	0	1	10	2	4	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0005	266	17	8	4	2	2	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0006	266	12	8	4	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0007	266	11	0	1	9	0	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0008	266	10	9	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0009	266	9	1	1	6	1	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0010	266	6	5	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0011	266	6	6	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0012	266	6	0	0	5	0	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0013	266	5	2	2	1	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0014	266	5	1	0	3	1	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	a0015	266	5	4	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848