JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HLA-G_chr6_29822825_29836021	0/0	a0014	338	1	0	0	1	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	a0015	338	1	0	0	1	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLCS_chr21_36743626_36971669	1/1	a0001	873	230	65	54	74	10	25	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	a0002	873	18	12	1	4	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	a0003	873	4	3	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	a0004	726	1	0	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	a0005	873	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	a0006	873	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	a0007	873	1	0	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	a0008	873	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	a0009	873	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLF_chr17_55259960_55330187	1/1	a0001	295	408	96	76	172	16	46	copy fasta	HLF	chr17	55259960	55330187
HLTF_chr3_149025127_149091533	1/1	a0001	1009	354	71	54	170	16	41	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0002	1009	15	0	2	10	2	1	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0003	1009	8	8	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0004	1009	5	4	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0005	1009	4	4	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0006	1009	4	0	3	0	0	1	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0007	1009	2	2	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0008	1009	2	0	0	2	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0009	1009	2	0	2	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0010	1009	2	2	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0011	1009	1	0	0	1	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0012	1009	1	0	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0013	1009	1	0	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0014	1009	1	0	0	0	0	1	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0015	1009	1	0	0	1	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	a0016	1009	1	1	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLX_chr1_220874443_220890059	1/1	a0001	488	198	29	33	111	5	18	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0002	488	106	42	16	38	2	8	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0003	488	95	15	16	46	3	15	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0004	488	13	4	8	0	1	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0005	493	12	0	0	12	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0006	488	6	0	3	0	3	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0007	493	3	0	2	0	0	1	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0008	488	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0009	488	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0010	488	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0011	488	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	a0012	488	1	0	0	1	0	0	copy fasta	HLX	chr1	220874443	220890059
HM13_chr20_31509442_31574543	1/1	a0001	426	201	77	54	46	10	12	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	a0002	426	1	1	0	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HMBOX1_chr8_28885395_29058262	1/1	a0001	420	344	90	50	158	12	32	copy fasta	HMBOX1	chr8	28885395	29058262
HMBS_chr11_119079881_119098549	1/1	a0001	361	440	98	79	201	14	46	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	a0002	361	1	0	0	1	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	a0003	51	1	0	0	1	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	a0004	361	1	0	0	1	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	a0005	361	1	0	1	0	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMCES_chr3_129273870_129311186	1/1	a0001	354	308	83	74	108	8	33	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	a0002	354	28	1	0	22	0	5	copy fasta	HMCES	chr3	129273870	129311186