JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HMCES_chr3_129273870_129311186	0/0	a0003	354	1	0	0	1	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	a0004	129	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	a0005	354	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	a0006	354	1	0	0	1	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCN1_chr1_185729391_186195949	0/0	a0001	5635	18	9	6	3	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0002	5635	7	7	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	1/0	a0003	5635	7	0	2	1	0	3	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0004	5635	6	5	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0005	5635	3	2	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0006	5635	3	0	1	0	1	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0007	5635	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0008	5635	2	1	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0009	5635	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0010	5635	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0011	5635	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0012	5635	2	1	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0013	5635	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0014	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0015	5635	1	0	0	0	1	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0016	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0017	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0018	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0019	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0020	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0021	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/1	a0022	5635	1	0	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0023	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0024	5635	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0025	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0026	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0027	5635	1	0	0	1	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0028	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0029	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0030	5635	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0031	5635	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0032	5635	1	0	0	0	1	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0033	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0034	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0035	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0036	5635	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0037	5635	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0038	5635	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0039	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0040	5635	1	0	0	1	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0041	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0042	5635	1	0	0	0	1	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0043	5635	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0044	5635	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0045	5635	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	a0046	5635	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949