JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HMCN2_chr9_130260760_130439123	0/0	a0050	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0051	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0052	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0053	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0054	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0055	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0056	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0057	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0058	5077	1	0	0	0	1	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0059	5077	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0060	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0061	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0062	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0063	5077	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0064	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0065	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0066	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0067	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0068	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0069	5077	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0070	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0071	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0072	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0073	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0074	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0075	4648	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0076	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0077	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0078	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0079	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0080	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0081	5077	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0082	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0083	4648	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0084	5077	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0085	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0086	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0087	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0088	5077	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0089	5077	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0090	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0091	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0092	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0093	5077	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0094	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0095	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0096	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0097	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0098	5077	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0099	5077	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123