JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HMCN2_chr9_130260760_130439123	0/0	a0150	5079	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0151	5079	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0152	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0153	698	1	0	0	0	1	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0154	5079	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0155	5079	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0156	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	1/0	a0157	5079	1	0	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0158	4650	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/1	a0159	5079	1	0	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0160	5079	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0161	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0162	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0163	5079	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0164	5079	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0165	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0166	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0167	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0168	5079	1	0	0	0	1	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0169	5079	1	0	0	0	1	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0170	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0171	5079	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0172	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0173	5079	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0174	5079	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0175	5079	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0176	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0177	5079	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0178	5079	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0179	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0180	5079	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	a0181	5079	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMG20A_chr15_77415888_77490603	1/1	a0001	347	366	74	70	166	14	40	copy fasta	HMG20A	chr15	77415888	77490603
HMG20B_chr19_3567944_3584083	0/0	a0000	0	14	2	3	8	0	1	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	1/1	a0001	317	389	92	77	156	16	46	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	a0002	317	1	0	1	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	a0003	317	1	0	1	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	a0004	317	1	0	0	0	0	1	copy fasta	HMG20B	chr19	3567944	3584083
HMGA1_chr6_34231873_34251231	1/1	a0001	107	322	92	68	114	14	32	copy fasta	HMGA1	chr6	34231873	34251231
HMGA2_chr12_65819483_65971291	1/1	a0001	109	235	64	36	95	8	30	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	a0002	109	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGB1_chr13_30451704_30470936	1/1	a0001	215	383	96	78	156	12	39	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	a0002	215	1	0	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB2_chr4_173326376_173339358	1/1	a0001	209	370	98	68	146	14	42	copy fasta	HMGB2	chr4	173326376	173339358
HMGB3_chrX_150978335_150995771	1/1	a0001	200	328	81	61	141	13	30	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	a0002	200	1	1	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	a0003	133	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB4_chr1_33859079_33869791	0/0	a0001	186	359	87	64	158	9	41	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	1/0	a0002	186	28	0	6	13	5	3	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	a0003	186	4	4	0	0	0	0	copy fasta	HMGB4	chr1	33859079	33869791