JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HMGB4_chr1_33859079_33869791	0/1	a0004	186	4	3	0	0	0	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	a0005	186	3	0	0	3	0	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	a0006	186	2	0	1	0	0	1	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	a0007	186	1	0	0	0	0	1	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	a0008	186	1	0	1	0	0	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGCLL1_chr6_55429373_55584192	1/1	a0001	340	332	73	56	153	12	36	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	a0002	340	1	0	0	1	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	a0003	340	1	1	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCL_chr1_23796885_23830429	1/1	a0001	325	369	84	70	163	16	34	copy fasta	HMGCL	chr1	23796885	23830429
HMGCL_chr1_23796885_23830429	0/0	a0002	325	3	0	0	3	0	0	copy fasta	HMGCL	chr1	23796885	23830429
HMGCR_chr5_75332220_75367101	1/1	a0001	888	387	90	72	181	8	34	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	a0002	888	2	0	0	2	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	a0003	888	1	0	0	1	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCS1_chr5_43282470_43318412	1/1	a0001	520	310	92	64	110	8	34	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	a0002	520	2	0	0	2	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS2_chr1_119743002_119773905	1/1	a0001	508	431	92	78	199	18	42	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	a0002	508	1	0	0	0	0	1	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	a0003	508	1	0	0	0	0	1	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	a0004	508	1	0	0	1	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGN1_chr21_39337315_39354088	1/1	a0001	100	395	86	77	167	18	45	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	a0002	100	18	6	5	5	0	2	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	a0003	100	1	0	0	0	0	1	copy fasta	HMGN1	chr21	39337315	39354088
HMGN2_chr1_26467440_26481642	1/1	a0001	90	390	92	80	154	18	44	copy fasta	HMGN2	chr1	26467440	26481642
HMGN3_chr6_79196245_79239682	1/1	a0001	130	322	94	64	112	12	38	copy fasta	HMGN3	chr6	79196245	79239682
HMGN4_chr6_26533366_26551933	1/1	a0001	90	392	90	74	170	16	40	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	a0002	90	3	3	0	0	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	a0003	90	1	1	0	0	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN5_chrX_81108699_81206913	1/1	a0001	282	213	57	36	89	7	22	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	a0002	282	7	6	1	0	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	a0003	282	2	2	0	0	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	a0004	282	2	0	0	2	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	a0005	282	1	1	0	0	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGXB3_chr5_149995739_150058128	0/1	a0001	1292	180	72	29	55	4	19	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	1/0	a0002	1292	99	0	17	60	3	18	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0003	1292	42	4	15	21	2	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0004	1292	33	8	5	16	0	4	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0005	1292	8	5	3	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0006	1292	4	1	1	1	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0007	1292	3	3	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0008	1292	2	2	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0009	1292	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0010	1292	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0011	1292	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0012	1292	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0013	1292	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0014	1292	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0015	1292	1	0	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0016	1292	1	0	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	a0017	1292	1	0	0	0	1	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB4_chr22_35252493_35300807	1/0	a0001	601	209	63	27	97	5	16	copy fasta	HMGXB4	chr22	35252493	35300807