JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HMGXB4_chr22_35252493_35300807	0/1	a0002	601	132	10	25	69	5	22	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	a0003	601	1	1	0	0	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMHB1_chr5_143807161_143825716	1/1	a0001	17	292	69	53	128	9	31	copy fasta	HMHB1	chr5	143807161	143825716
HMHB1_chr5_143807161_143825716	0/0	a0002	17	166	29	29	92	3	13	copy fasta	HMHB1	chr5	143807161	143825716
HMMR_chr5_163455632_163496941	1/1	a0001	725	211	54	39	80	10	26	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0002	725	61	1	3	57	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0003	725	44	18	9	12	1	4	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0004	725	26	9	9	3	0	5	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0005	725	18	0	1	15	0	2	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0006	725	8	0	5	0	0	3	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0007	725	7	0	4	0	0	3	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0008	725	6	0	0	6	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0009	725	5	3	2	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0010	725	4	4	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0011	725	3	0	0	1	1	1	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0012	725	3	0	3	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0013	725	2	2	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0014	725	2	2	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0015	725	1	0	1	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0016	725	1	1	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0017	579	1	1	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0018	725	1	0	0	1	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0019	725	1	0	0	1	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	a0020	725	1	1	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMOX1_chr22_35376096_35399207	1/1	a0001	288	362	76	62	167	16	39	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	a0002	288	17	3	0	14	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	a0003	288	1	0	0	0	0	1	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	a0004	288	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	a0005	288	1	1	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	a0006	288	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	a0007	288	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX2_chr16_4471398_4515347	0/1	a0001	316	311	92	50	126	4	38	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	a0002	316	1	0	0	1	0	0	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	a0003	316	1	0	0	1	0	0	copy fasta	HMOX2	chr16	4471398	4515347
HMSD_chr18_63944301_63966835	1/1	a0001	139	400	90	70	190	12	36	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	a0002	82	4	4	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMX1_chr4_8862048_8876839	0/0	a0001	348	377	66	76	178	16	41	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0002	348	40	28	7	0	2	3	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0003	348	2	2	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0004	348	2	0	0	0	0	2	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0005	348	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0006	348	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0007	348	1	0	0	0	0	1	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0008	348	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0009	348	1	0	1	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0010	348	1	0	0	0	0	1	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	a0011	348	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX2_chr10_123143136_123155672	1/1	a0001	273	440	91	75	207	16	49	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	a0002	273	5	4	1	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	a0003	273	1	0	0	1	0	0	copy fasta	HMX2	chr10	123143136	123155672