Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALG8_chr11_78095946_78144626	0/0	a0005	526	1	0	1	0	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	a0006	526	1	0	0	0	0	1	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	a0007	526	1	0	0	1	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	a0008	526	1	0	0	1	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG9_chr11_111777195_111876581	1/1	a0001	618	203	65	44	62	11	19	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	a0002	618	97	15	16	50	1	15	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	a0003	618	6	6	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	a0004	618	4	0	0	4	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	a0005	618	2	1	1	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	a0006	618	1	0	1	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	a0007	618	1	1	0	0	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALKAL1_chr8_52529037_52570430	1/1	a0001	129	391	91	71	169	14	44	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	a0002	129	4	3	1	0	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL1_chr8_52529037_52570430	0/0	a0003	129	1	0	0	1	0	0	copy fasta	ALKAL1	chr8	52529037	52570430
ALKAL2_chr2_274558_293091	1/1	a0001	152	415	94	76	179	16	48	copy fasta	ALKAL2	chr2	274558	293091
ALKAL2_chr2_274558_293091	0/0	a0002	152	1	0	0	1	0	0	copy fasta	ALKAL2	chr2	274558	293091
ALKBH1_chr14_77667404_77713023	1/1	a0001	389	313	86	46	142	12	25	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	a0002	389	38	4	10	17	3	4	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	a0003	389	3	0	2	0	1	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	a0004	389	1	0	0	1	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	a0005	389	1	0	0	0	0	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	a0006	389	1	1	0	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	a0007	389	1	0	0	0	0	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	a0008	389	1	1	0	0	0	0	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH1_chr14_77667404_77713023	0/0	a0009	389	1	0	0	0	0	1	copy fasta	ALKBH1	chr14	77667404	77713023
ALKBH2_chr12_109083189_109098472	1/1	a0001	261	457	89	81	224	16	45	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	a0002	261	10	5	0	4	0	1	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH2_chr12_109083189_109098472	0/0	a0003	261	3	0	3	0	0	0	copy fasta	ALKBH2	chr12	109083189	109098472
ALKBH3_chr11_43875831_43925274	1/0	a0001	286	319	85	67	126	12	28	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	a0002	286	51	11	11	17	2	10	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/1	a0003	69	2	0	0	1	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	a0004	286	2	0	0	2	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	a0005	286	1	1	0	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH3_chr11_43875831_43925274	0/0	a0006	286	1	1	0	0	0	0	copy fasta	ALKBH3	chr11	43875831	43925274
ALKBH4_chr7_102451238_102469863	1/1	a0001	302	354	90	67	145	17	33	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	a0002	302	48	0	13	21	1	13	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	a0003	302	1	1	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH4_chr7_102451238_102469863	0/0	a0004	302	1	1	0	0	0	0	copy fasta	ALKBH4	chr7	102451238	102469863
ALKBH5_chr17_18178828_18214954	1/1	a0001	394	418	98	70	194	10	44	copy fasta	ALKBH5	chr17	18178828	18214954
ALKBH6_chr19_36004120_36019213	1/1	a0001	238	385	88	79	162	12	42	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	a0002	238	4	4	0	0	0	0	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH6_chr19_36004120_36019213	0/0	a0003	238	3	2	1	0	0	0	copy fasta	ALKBH6	chr19	36004120	36019213
ALKBH7_chr19_6367794_6380250	1/1	a0001	221	364	89	66	161	13	33	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	a0002	221	5	0	3	0	1	1	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	a0003	221	1	0	1	0	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	a0004	221	1	0	0	1	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH7_chr19_6367794_6380250	0/0	a0005	221	1	1	0	0	0	0	copy fasta	ALKBH7	chr19	6367794	6380250
ALKBH8_chr11_107497727_107570735	1/1	a0001	664	359	65	66	184	12	30	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0002	664	10	8	2	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0003	664	5	5	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735