JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HMX2_chr10_123143136_123155672	0/0	a0004	273	1	0	0	0	0	1	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	a0005	273	1	1	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX3_chr10_123130970_123144423	1/1	a0001	357	455	90	85	216	16	46	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	a0002	357	6	6	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	a0003	357	2	2	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	a0004	357	1	0	1	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HNF1A_chr12_120973543_121007512	0/0	a0000	0	1	0	0	1	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	a0001	631	228	76	39	80	11	22	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/1	a0002	631	117	4	21	78	4	9	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	a0003	631	26	0	1	24	0	1	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	a0004	631	17	5	2	7	1	2	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	1/0	a0005	631	9	8	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	a0006	315	7	2	5	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	a0007	622	2	0	2	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	a0008	631	1	1	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	a0009	631	1	0	1	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	a0010	631	1	0	1	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1B_chr17_37681431_37750059	0/1	a0001	557	405	92	68	182	18	44	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	a0002	557	2	0	0	0	0	2	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	a0003	557	1	0	0	1	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	a0004	557	1	0	0	1	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF4A_chr20_44350699_44437845	1/1	a0001	452	309	87	51	114	18	37	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	a0002	452	7	0	3	2	0	2	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	a0003	452	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	a0004	452	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	a0005	452	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	a0006	452	1	0	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	a0007	452	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	a0008	452	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4G_chr8_75534869_75571834	0/0	a0001	455	238	78	31	99	9	21	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	1/1	a0002	455	152	6	29	85	9	21	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	a0003	455	2	2	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	a0004	455	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	a0005	455	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNMT_chr2_137959473_138021364	1/1	a0001	292	308	85	52	122	9	38	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	a0002	292	23	0	8	8	1	6	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	a0003	292	1	1	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNRNPA0_chr5_137740651_137759363	1/1	a0001	305	364	89	68	146	14	45	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	a0002	306	3	1	0	0	0	2	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	a0003	301	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA1L2_chr13_52637431_52648773	0/0	a0000	0	6	0	6	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	1/1	a0001	320	211	76	29	76	4	24	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0002	320	104	16	33	37	8	10	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0003	320	100	0	7	88	0	5	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0004	320	5	0	4	0	1	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0005	320	4	3	0	0	0	1	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0006	320	1	0	1	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0007	320	1	0	0	0	1	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0008	320	1	1	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	a0009	320	1	1	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773