JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HNRNPCL4_chr1_13158914_13170631	0/0	a0007	293	1	0	1	0	0	0	copy fasta	HNRNPCL4	chr1	13158914	13170631
HNRNPC_chr14_21204147_21274442	1/1	a0001	293	387	92	72	163	14	44	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPC_chr14_21204147_21274442	0/0	a0002	293	1	0	0	1	0	0	copy fasta	HNRNPC	chr14	21204147	21274442
HNRNPDL_chr4_82417569_82435462	1/1	a0001	420	342	91	58	139	14	38	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	a0002	420	2	2	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	a0003	420	1	0	0	0	0	1	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	a0004	420	1	0	0	0	0	1	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	a0005	420	1	0	0	1	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPDL_chr4_82417569_82435462	0/0	a0006	420	1	1	0	0	0	0	copy fasta	HNRNPDL	chr4	82417569	82435462
HNRNPD_chr4_82347498_82378991	1/1	a0001	355	331	86	48	149	12	34	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPD_chr4_82347498_82378991	0/0	a0002	334	1	0	0	1	0	0	copy fasta	HNRNPD	chr4	82347498	82378991
HNRNPF_chr10_43380618_43414186	1/1	a0001	415	361	90	70	145	12	42	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPF_chr10_43380618_43414186	0/0	a0002	415	3	0	0	3	0	0	copy fasta	HNRNPF	chr10	43380618	43414186
HNRNPH1_chr5_179609178_179628671	1/1	a0001	449	430	96	76	194	14	48	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH2_chrX_101403222_101419133	1/1	a0001	449	308	76	49	140	11	30	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH3_chr10_68327064_68348193	1/1	a0001	346	390	85	62	183	13	45	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	a0002	346	11	1	8	0	1	1	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	a0003	346	3	0	0	3	0	0	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPK_chr9_83963083_83985215	1/1	a0001	464	414	96	66	188	18	44	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPLL_chr2_38556969_38607928	1/1	a0001	542	316	87	60	121	12	34	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	a0002	543	11	3	0	8	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	a0003	542	9	0	0	9	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	a0004	542	2	0	0	0	2	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPL_chr19_38831370_38854986	1/1	a0001	589	390	95	70	165	14	44	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	a0002	589	1	0	0	1	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	a0003	589	1	1	0	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPM_chr19_8439975_8494114	1/1	a0001	730	355	90	66	132	18	47	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	a0002	730	1	0	0	1	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	a0003	730	1	1	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	a0004	726	1	0	0	0	0	1	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	a0005	730	1	1	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	a0006	523	1	0	0	1	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPR_chr1_23299688_23349284	1/1	a0001	633	354	88	56	156	12	40	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPUL1_chr19_41259372_41312787	1/1	a0001	856	286	82	60	92	12	38	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	a0002	856	2	0	0	2	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	a0003	856	1	0	0	1	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	a0004	856	1	0	0	1	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL2_chr11_62707630_62732457	1/1	a0001	747	348	85	62	157	10	32	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	a0002	747	2	0	0	0	0	2	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	a0003	747	1	1	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	a0004	747	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPU_chr1_244845297_244869543	1/1	a0001	825	344	91	61	136	12	42	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	a0002	825	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	a0003	825	1	0	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HOATZ_chr11_111509778_111542043	1/1	a0001	169	297	84	66	99	10	36	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	a0002	169	7	7	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	a0003	169	3	0	0	3	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	a0004	169	2	2	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	a0005	169	1	1	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	a0006	169	1	1	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043