JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HOATZ_chr11_111509778_111542043	0/0	a0007	169	1	1	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOGA1_chr10_97579389_97617802	1/1	a0001	327	417	97	82	175	16	45	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	a0002	327	2	0	0	2	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	a0003	327	1	0	0	1	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	a0004	327	1	0	0	0	0	1	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	a0005	327	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOMER1_chr5_79367636_79519134	1/1	a0001	354	290	82	52	122	8	24	copy fasta	HOMER1	chr5	79367636	79519134
HOMER2_chr15_82843983_82957720	1/1	a0001	343	329	79	77	135	10	26	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	a0002	343	16	15	1	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	a0003	343	1	0	0	0	1	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	a0004	343	1	0	0	0	1	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	a0005	343	1	0	0	1	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER3_chr19_18924203_18946217	0/0	a0000	0	5	0	0	5	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/1	a0001	361	396	93	74	164	17	47	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	a0002	361	7	7	0	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	a0003	361	1	0	0	0	1	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	a0004	361	1	0	0	0	0	1	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	a0005	361	1	0	0	1	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	1/0	a0006	361	1	0	0	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMEZ_chr14_23267422_23291132	0/1	a0001	549	129	25	22	62	6	13	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	1/0	a0002	550	107	11	16	70	5	4	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0003	549	48	8	19	13	1	7	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0004	549	42	25	2	7	0	8	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0005	548	20	0	1	17	0	2	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0006	549	17	6	1	7	1	2	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0007	548	9	8	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0008	549	5	4	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0009	549	3	0	0	2	0	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0010	550	3	1	2	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0011	160	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0012	175	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0013	549	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0014	549	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0015	550	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0016	549	1	0	0	0	1	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0017	550	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0018	549	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0019	549	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0020	402	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	a0021	549	1	0	0	0	0	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOOK1_chr1_59809949_59881322	1/0	a0001	728	246	73	41	97	12	22	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	a0002	728	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	a0003	728	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/1	a0004	728	1	0	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	a0005	728	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	a0006	728	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	a0007	728	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK2_chr19_12758003_12780552	1/0	a0001	719	262	91	47	87	6	30	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/1	a0002	719	71	1	24	31	7	7	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0003	719	12	0	0	12	0	0	copy fasta	HOOK2	chr19	12758003	12780552