JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HOOK2_chr19_12758003_12780552	0/0	a0004	719	5	0	0	5	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0005	719	2	2	0	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0006	75	1	1	0	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0007	719	1	0	0	1	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0008	719	1	0	0	1	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0009	719	1	0	0	0	1	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0010	719	1	0	0	1	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0011	719	1	1	0	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0012	719	1	0	0	0	0	1	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	a0013	719	1	0	1	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK3_chr8_42891978_43035535	1/1	a0001	718	160	80	32	28	2	16	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	a0002	718	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	a0003	718	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOPX_chr4_56642998_56686296	1/1	a0001	91	375	82	70	167	16	38	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	a0002	91	1	0	0	1	0	0	copy fasta	HOPX	chr4	56642998	56686296
HORMAD1_chr1_150693060_150725895	1/0	a0001	394	266	71	36	121	11	26	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/1	a0002	394	117	20	19	59	5	13	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	a0003	394	5	0	0	0	0	5	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	a0004	394	1	1	0	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	a0005	394	1	1	0	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	a0006	394	1	1	0	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	a0007	394	1	0	1	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD2_chr22_30075464_30182075	1/1	a0001	307	343	89	70	140	12	30	copy fasta	HORMAD2	chr22	30075464	30182075
HORMAD2_chr22_30075464_30182075	0/0	a0002	307	5	4	1	0	0	0	copy fasta	HORMAD2	chr22	30075464	30182075
HORMAD2_chr22_30075464_30182075	0/0	a0003	307	1	0	1	0	0	0	copy fasta	HORMAD2	chr22	30075464	30182075
HORMAD2_chr22_30075464_30182075	0/0	a0004	307	1	1	0	0	0	0	copy fasta	HORMAD2	chr22	30075464	30182075
HOXA10_chr7_27165605_27179320	1/1	a0001	410	424	90	75	197	14	46	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	a0002	410	6	6	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	a0003	410	3	0	0	3	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	a0004	410	1	0	0	1	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	a0005	410	1	0	0	1	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	a0006	410	1	0	1	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA11_chr7_27176157_27190232	1/1	a0001	313	429	98	78	190	16	45	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	a0002	313	1	0	0	1	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	a0003	313	1	0	0	0	0	1	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	a0004	313	1	0	0	1	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA13_chr7_27189364_27205091	1/0	a0001	388	411	96	76	182	12	44	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	a0002	388	2	1	1	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	a0003	388	1	0	1	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	a0004	388	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/1	a0005	382	1	0	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA1_chr7_27087993_27101000	0/0	a0001	335	314	27	63	170	14	40	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	1/1	a0002	335	89	67	15	3	0	2	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	a0003	336	4	1	0	1	0	2	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	a0004	336	3	3	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	a0005	336	2	2	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	a0006	335	1	0	0	0	1	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	a0007	335	1	0	0	0	1	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA2_chr7_27095354_27107683	1/1	a0001	376	402	96	76	166	16	46	copy fasta	HOXA2	chr7	27095354	27107683
HOXA2_chr7_27095354_27107683	0/0	a0002	376	1	1	0	0	0	0	copy fasta	HOXA2	chr7	27095354	27107683