JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HOXA2_chr7_27095354_27107683	0/0	a0003	376	1	1	0	0	0	0	copy fasta	HOXA2	chr7	27095354	27107683
HOXA3_chr7_27102010_27157583	1/1	a0001	443	319	78	65	128	6	40	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	a0002	443	4	4	0	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	a0003	443	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	a0004	443	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	a0005	443	1	0	1	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA4_chr7_27123525_27135757	0/1	a0001	320	301	65	51	133	10	41	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	a0002	320	79	21	19	34	2	3	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	1/0	a0003	320	15	9	1	1	0	3	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	a0004	320	6	0	0	6	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	a0005	320	2	0	0	2	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	a0006	320	1	0	0	0	0	1	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	a0007	320	1	0	1	0	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	a0008	320	1	1	0	0	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA5_chr7_27136052_27148681	0/0	a0000	0	1	0	0	1	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	1/1	a0001	270	395	86	74	179	12	42	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	a0002	270	2	0	0	2	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA6_chr7_27140396_27152774	1/1	a0001	233	386	84	74	176	12	38	copy fasta	HOXA6	chr7	27140396	27152774
HOXA7_chr7_27148716_27161675	0/0	a0001	230	233	9	40	141	8	35	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	1/1	a0002	230	157	78	32	35	2	8	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	a0003	230	5	3	1	0	0	1	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	a0004	230	1	0	1	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA9_chr7_27157438_27170537	1/1	a0001	272	418	93	78	191	10	44	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	a0002	272	6	5	1	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	a0003	272	2	0	0	2	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	a0004	272	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	a0005	272	1	0	1	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	a0006	272	1	0	0	0	1	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	a0007	272	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	a0008	272	1	0	0	0	1	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	a0009	272	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXB13_chr17_48719763_48733750	1/1	a0001	284	421	92	76	191	14	46	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	a0002	284	2	0	0	0	0	2	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	a0003	284	1	0	0	1	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	a0004	284	1	0	0	1	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	a0005	284	1	0	0	1	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB1_chr17_48523526_48536011	0/1	a0001	301	370	78	65	177	15	34	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	a0002	304	35	5	9	13	2	6	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	a0003	304	11	8	2	0	1	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	1/0	a0004	301	7	4	2	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	a0005	304	1	1	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	a0006	301	1	1	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	a0007	301	1	1	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB2_chr17_48537655_48550109	1/1	a0001	356	420	93	74	189	12	50	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	a0002	356	2	0	0	2	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	a0003	356	2	2	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	a0004	356	1	1	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	a0005	356	1	0	0	1	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB3_chr17_48543870_48595241	0/1	a0001	431	231	32	36	133	8	21	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	1/0	a0002	431	138	58	27	35	4	13	copy fasta	HOXB3	chr17	48543870	48595241