JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HOXB3_chr17_48543870_48595241	0/0	a0003	431	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	a0004	431	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	a0005	435	1	0	1	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	a0006	431	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	a0007	431	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB4_chr17_48570507_48583350	1/1	a0001	251	404	95	67	184	16	40	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	a0002	251	1	1	0	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	a0003	251	1	0	0	1	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	a0004	251	1	0	0	1	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	a0005	251	1	0	1	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB5_chr17_48586257_48598779	1/1	a0001	269	412	98	76	190	12	34	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	a0002	269	1	0	0	1	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	a0003	138	1	0	0	1	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB6_chr17_48590751_48609986	1/1	a0001	224	387	97	66	174	14	34	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	a0002	224	2	0	2	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	a0003	224	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	a0004	224	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	a0005	224	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	a0006	224	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	a0007	224	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB7_chr17_48602232_48616017	0/1	a0001	217	282	76	50	111	11	33	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	1/0	a0002	217	70	13	18	29	1	8	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	a0003	217	59	6	3	46	2	2	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	a0004	217	1	0	0	0	0	1	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	a0005	217	1	1	0	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	a0006	217	1	0	1	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB8_chr17_48607346_48620292	1/1	a0001	243	408	87	68	191	14	46	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	a0002	243	12	11	1	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	a0003	243	1	0	0	1	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	a0004	243	1	0	1	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB9_chr17_48616156_48631358	1/1	a0001	250	410	95	70	189	16	38	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	a0002	250	6	0	2	4	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	a0003	250	2	0	0	0	0	2	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	a0004	250	1	0	0	1	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	a0005	250	1	0	0	1	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	a0006	250	1	0	0	1	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	a0007	250	1	1	0	0	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXC10_chr12_53980146_53995279	0/0	a0001	342	361	92	74	138	16	41	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	a0002	342	6	0	0	6	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	a0003	342	2	1	1	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	a0004	342	1	0	0	0	0	1	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	a0005	342	1	0	1	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	a0006	342	1	1	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC11_chr12_53968126_53982643	1/1	a0001	304	357	91	68	143	17	36	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	a0002	304	33	1	8	17	1	6	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	a0003	304	4	0	0	4	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	a0004	304	2	0	0	2	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC12_chr12_53949903_53963956	1/1	a0001	282	416	90	86	180	16	42	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	a0002	282	5	5	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	a0003	282	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956