JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HOXC12_chr12_53949903_53963956	0/0	a0004	282	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	a0005	282	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC13_chr12_53933831_53951544	1/1	a0001	330	397	98	76	168	12	41	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	a0002	331	4	0	1	0	0	3	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	a0003	330	1	0	1	0	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC4_chr12_54048835_54061030	1/1	a0001	264	365	89	56	183	10	25	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	a0002	264	31	0	4	12	3	12	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	a0003	264	1	0	0	0	0	1	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	a0004	264	1	0	0	1	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	a0005	264	1	0	0	0	1	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	a0006	264	1	1	0	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC5_chr12_54028050_54040361	1/1	a0001	222	411	87	78	186	16	42	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	a0002	222	3	3	0	0	0	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC6_chr12_54023440_54035823	1/1	a0001	235	403	88	82	173	16	42	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/0	a0002	235	1	0	0	1	0	0	copy fasta	HOXC6	chr12	54023440	54035823
HOXC8_chr12_54003985_54017769	1/1	a0001	242	299	75	56	125	14	27	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	a0002	242	3	1	2	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	a0003	242	1	0	0	0	0	1	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	a0004	242	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	a0005	237	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	a0006	231	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC9_chr12_53995161_54008337	1/1	a0001	260	336	82	66	136	18	32	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	a0002	260	6	6	0	0	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXD10_chr2_176111778_176124937	1/1	a0001	340	422	85	78	193	14	50	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	a0002	340	2	2	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	a0003	340	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	a0004	340	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	a0005	340	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	a0006	340	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD11_chr2_176102280_176114754	1/1	a0001	338	427	88	80	195	14	48	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	a0002	338	2	0	0	2	0	0	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	a0003	338	1	0	0	1	0	0	copy fasta	HOXD11	chr2	176102280	176114754
HOXD12_chr2_176094795_176107489	1/1	a0001	270	382	85	61	173	14	47	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	a0002	270	15	0	12	2	0	1	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	a0003	270	2	2	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	a0004	270	2	0	2	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	a0005	270	1	0	0	1	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	a0006	270	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	a0007	270	1	0	1	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD13_chr2_176087721_176100944	1/1	a0001	343	399	83	72	184	15	43	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	a0002	343	4	0	0	4	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	a0003	343	3	3	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	a0004	343	2	0	2	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	a0005	339	2	0	0	2	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	a0006	347	1	0	0	0	0	1	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	a0007	343	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	a0008	343	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	a0009	343	1	0	0	0	1	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD1_chr2_176183668_176195907	1/1	a0001	328	296	57	50	142	12	33	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	a0002	328	35	5	17	4	4	5	copy fasta	HOXD1	chr2	176183668	176195907