JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HPF1_chr4_169724470_169762944	0/0	a0005	81	1	0	0	0	0	1	copy fasta	HPF1	chr4	169724470	169762944
HPGDS_chr4_94293535_94347836	1/1	a0001	199	306	83	52	123	14	32	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	a0002	199	3	3	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	a0003	199	1	0	0	1	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	a0004	199	1	1	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	a0005	199	1	1	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGD_chr4_174485175_174527488	1/1	a0001	266	408	89	67	186	16	48	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	a0002	266	2	0	0	2	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	a0003	266	2	0	2	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	a0004	261	1	1	0	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	a0005	266	1	0	1	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPN_chr19_35036721_35071573	1/1	a0001	417	380	94	70	154	16	44	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	a0002	417	2	0	0	2	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	a0003	417	1	0	0	1	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	a0004	417	1	0	0	1	0	0	copy fasta	HPN	chr19	35036721	35071573
HPRT1_chrX_134455165_134505668	1/1	a0001	218	275	58	51	134	7	23	copy fasta	HPRT1	chrX	134455165	134505668
HPRT1_chrX_134455165_134505668	0/0	a0002	94	1	0	0	1	0	0	copy fasta	HPRT1	chrX	134455165	134505668
HPR_chr16_72058226_72082246	1/0	a0001	348	219	26	56	102	9	25	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/1	a0002	348	146	40	15	68	4	18	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0003	348	32	15	2	12	2	1	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0004	348	4	1	1	0	1	1	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0005	348	2	0	0	0	1	1	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0006	348	2	0	0	2	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0007	116	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0008	348	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0009	348	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0010	348	1	1	0	0	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0011	348	1	1	0	0	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0012	348	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	a0013	348	1	0	0	0	1	0	copy fasta	HPR	chr16	72058226	72082246
HPS1_chr10_98411198_98451935	1/1	a0001	700	322	62	49	158	12	39	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0002	700	50	10	14	24	0	2	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0003	700	19	4	2	4	3	6	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0004	700	14	0	5	8	1	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0005	700	4	2	0	2	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0006	700	3	0	3	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0007	700	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0008	700	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0009	700	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0010	700	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0011	700	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0012	700	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0013	700	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0014	700	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0015	700	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0016	700	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0017	700	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0018	700	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0019	700	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0020	700	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935