Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALKBH8_chr11_107497727_107570735	0/0	a0004	664	5	0	0	5	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0005	664	4	0	1	0	1	2	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0006	664	3	0	0	0	1	2	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0007	664	3	3	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0008	664	2	0	2	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0009	664	2	2	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0010	664	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0011	664	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0012	664	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0013	664	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0014	664	1	0	0	1	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0015	664	1	1	0	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALKBH8_chr11_107497727_107570735	0/0	a0016	664	1	0	1	0	0	0	copy fasta	ALKBH8	chr11	107497727	107570735
ALK_chr2_29187774_29926586	0/0	a0001	1620	26	22	3	0	1	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	a0002	1620	21	11	6	2	2	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	a0003	1620	19	11	3	2	1	2	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	a0004	1620	7	6	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	a0005	1620	4	4	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	a0006	1620	1	0	1	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	a0007	1620	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALK_chr2_29187774_29926586	0/0	a0008	1620	1	1	0	0	0	0	copy fasta	ALK	chr2	29187774	29926586
ALLC_chr2_3653200_3707671	1/0	a0001	391	117	25	34	45	4	8	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	a0002	390	70	21	12	26	4	7	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/1	a0003	390	60	23	15	14	4	3	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	a0004	391	16	8	0	8	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	a0005	390	3	2	1	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	a0006	390	3	3	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	a0007	390	2	2	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	a0008	390	1	1	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	a0009	100	1	0	0	1	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALLC_chr2_3653200_3707671	0/0	a0010	390	1	1	0	0	0	0	copy fasta	ALLC	chr2	3653200	3707671
ALMS1_chr2_73380836_73614916	0/0	a0001	4169	47	0	15	21	3	8	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0002	4165	27	21	2	0	3	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0003	4165	25	0	0	22	0	3	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0004	4165	24	4	14	0	1	5	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0005	4167	13	2	8	3	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0006	4166	11	10	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0007	4170	11	2	4	4	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0008	4166	6	5	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0009	4165	6	6	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0010	4167	6	3	2	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0011	4165	5	5	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0012	4165	4	3	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0013	4168	4	2	0	1	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0014	4165	3	3	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/1	a0015	4169	3	0	0	0	1	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0016	4169	3	0	0	3	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0017	4163	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0018	4165	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0019	4165	2	1	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916