JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HPS1_chr10_98411198_98451935	0/0	a0021	700	1	0	0	0	0	1	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0022	700	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0023	700	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	a0024	700	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS3_chr3_149124638_149178732	1/1	a0001	1004	372	86	56	162	18	48	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0002	1004	4	4	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0003	1004	3	0	0	3	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0004	1004	3	3	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0005	1004	3	0	0	3	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0006	1	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0007	1004	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0008	1004	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0009	1004	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0010	1004	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0011	1004	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	a0012	1004	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS4_chr22_26445882_26488783	0/1	a0001	708	165	30	34	76	5	19	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0002	708	127	27	17	60	8	15	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	1/0	a0003	708	85	20	17	41	1	5	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0004	708	8	5	3	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0005	708	6	6	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0006	708	3	1	2	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0007	708	2	0	0	0	2	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0008	708	2	0	0	2	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0009	708	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0010	708	1	1	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0011	708	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0012	708	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0013	708	1	0	0	0	0	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	a0014	708	1	0	1	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS5_chr11_18273676_18327140	1/1	a0001	1129	295	81	50	128	10	24	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0002	1129	56	14	10	28	3	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0003	1129	3	0	2	0	0	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0004	1129	3	0	0	3	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0005	1129	2	0	0	0	0	2	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0006	1129	2	0	0	2	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0007	1129	1	0	0	0	0	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0008	1129	1	0	0	1	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0009	1129	1	0	0	1	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0010	1129	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0011	1129	1	0	1	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0012	1129	1	0	0	0	1	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0013	1129	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0014	1129	1	0	1	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0015	1129	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0016	1129	1	0	0	1	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	a0017	1129	1	0	0	0	0	1	copy fasta	HPS5	chr11	18273676	18327140
HPS6_chr10_102060349_102073036	1/1	a0001	775	383	77	81	173	13	37	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0002	775	2	0	0	2	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0003	775	2	0	1	1	0	0	copy fasta	HPS6	chr10	102060349	102073036