JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HPS6_chr10_102060349_102073036	0/0	a0004	775	1	1	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0005	775	1	1	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0006	775	1	1	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0007	775	1	0	0	0	0	1	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0008	775	1	0	0	0	0	1	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0009	775	1	0	0	0	0	1	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0010	775	1	0	0	1	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0011	775	1	0	0	1	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	a0012	775	1	0	0	0	1	0	copy fasta	HPS6	chr10	102060349	102073036
HPSE2_chr10_98452077_99240852	0/0	a0001	592	86	34	13	31	3	5	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	a0002	592	50	20	7	19	1	3	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	a0003	592	3	3	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	a0004	592	2	2	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	a0005	592	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE_chr4_83287461_83339848	0/0	a0001	543	235	85	34	78	6	32	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	1/1	a0002	543	74	12	25	24	5	6	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	a0003	543	6	0	6	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	a0004	543	2	0	0	2	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	a0005	543	1	1	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	a0006	123	1	0	0	0	1	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	a0007	543	1	0	1	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPX_chr11_6426049_6445987	1/1	a0001	462	412	83	80	181	18	48	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0002	462	5	5	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0003	462	5	2	3	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0004	462	3	0	0	3	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0005	462	2	2	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0006	462	1	0	1	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0007	462	1	0	0	1	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0008	462	1	1	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0009	462	1	1	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	a0010	462	1	0	0	1	0	0	copy fasta	HPX	chr11	6426049	6445987
HP_chr16_72049505_72066055	1/0	a0001	406	255	30	34	138	13	39	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	a0002	347	105	18	32	47	3	5	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	a0003	347	58	44	9	0	1	4	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	a0004	406	2	0	1	0	1	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	a0005	406	1	0	0	1	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	a0006	406	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	a0007	406	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	a0008	406	1	0	1	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	a0009	406	1	0	1	0	0	0	copy fasta	HP	chr16	72049505	72066055
HRAS_chr11_527242_540576	0/1	a0001	189	396	93	74	170	16	42	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	a0002	194	1	1	0	0	0	0	copy fasta	HRAS	chr11	527242	540576
HRCT1_chr9_35901202_35912136	0/0	a0000	0	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	1/1	a0001	115	139	12	31	73	6	15	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0002	114	22	3	3	8	2	6	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0003	115	21	3	3	15	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0004	119	19	3	0	13	1	2	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0005	114	18	2	0	16	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0006	121	18	8	2	6	1	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0007	128	11	0	1	10	0	0	copy fasta	HRCT1	chr9	35901202	35912136