JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HRCT1_chr9_35901202_35912136	0/0	a0058	179	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0059	138	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0060	134	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0061	147	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0062	191	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0063	143	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0064	131	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0065	132	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0066	165	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0067	149	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0068	115	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0069	131	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0070	128	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0071	133	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0072	128	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0073	122	1	0	0	0	1	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0074	115	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0075	120	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0076	116	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0077	150	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0078	131	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0079	116	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0080	134	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0081	145	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0082	123	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0083	133	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0084	116	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0085	123	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0086	128	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0087	141	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0088	133	1	0	0	0	1	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0089	167	1	0	0	0	1	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0090	154	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0091	145	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	a0092	115	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRC_chr19_49146198_49160396	1/0	a0001	699	168	10	24	108	9	16	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/1	a0002	699	88	4	37	30	5	11	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0003	699	28	13	1	10	0	4	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0004	698	14	12	2	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0005	700	12	3	4	4	0	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0006	699	10	6	4	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0007	700	10	5	1	2	0	2	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0008	748	8	8	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0009	698	8	7	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0010	748	5	5	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0011	700	4	0	1	3	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0012	699	4	0	1	1	1	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0013	699	3	0	0	3	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0014	700	3	0	0	3	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0015	748	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396