JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HRC_chr19_49146198_49160396	0/0	a0016	748	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0017	697	2	0	0	0	0	2	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0018	699	2	1	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0019	698	2	0	1	0	1	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0020	699	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0021	698	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0022	752	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0023	699	2	0	0	2	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0024	698	2	0	0	2	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0025	699	2	0	0	0	0	2	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0026	749	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0027	698	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0028	699	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0029	747	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0030	396	1	0	0	0	0	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0031	699	1	0	0	0	0	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0032	698	1	0	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0033	698	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0034	700	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0035	697	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0036	749	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0037	698	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0038	699	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0039	750	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0040	699	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0041	699	1	0	0	0	0	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0042	699	1	0	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0043	700	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	a0044	753	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRG_chr3_186661014_186683234	1/0	a0001	525	117	26	35	33	6	16	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0002	525	100	5	15	66	5	9	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0003	525	81	4	13	54	2	8	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0004	525	62	25	10	23	1	3	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/1	a0005	525	53	17	8	19	0	8	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0006	525	15	0	0	15	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0007	525	9	2	0	7	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0008	525	9	1	1	6	0	1	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0009	524	7	6	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0010	525	4	4	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0011	525	3	3	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0012	525	3	3	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0013	525	2	0	0	0	0	2	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0014	525	1	1	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0015	525	1	0	0	1	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0016	525	1	0	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0017	525	1	0	0	0	0	1	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0018	525	1	0	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0019	525	1	0	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	a0020	525	1	1	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRH1_chr3_11149493_11268557	1/1	a0001	487	336	83	53	146	12	40	copy fasta	HRH1	chr3	11149493	11268557