JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HRH1_chr3_11149493_11268557	0/0	a0002	487	6	6	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	a0003	487	4	4	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	a0004	487	3	0	0	3	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	a0005	487	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	a0006	487	1	0	0	1	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	a0007	487	1	0	1	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH2_chr5_175653071_175715756	1/1	a0001	422	259	94	40	94	8	21	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	a0002	422	4	0	0	3	0	1	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	a0003	422	1	0	0	1	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH3_chr20_62209960_62225278	1/1	a0001	445	366	89	74	143	16	42	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	a0002	445	1	1	0	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	a0003	445	1	0	0	1	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH4_chr18_24455637_24484961	1/1	a0001	390	357	76	54	168	13	44	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	a0002	390	46	2	21	20	1	2	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	a0003	390	12	12	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	a0004	390	4	0	0	4	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	a0005	390	2	1	1	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	a0006	390	1	0	0	1	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	a0007	390	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	a0008	390	1	0	0	1	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRK_chr12_116851144_116886441	1/1	a0001	91	365	91	52	166	12	42	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	a0002	91	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRNR_chr1_152207076_152229193	0/1	a0001	15	382	77	69	173	18	44	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0002	3320	8	0	7	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0003	3086	5	5	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0004	1910	5	5	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	1/0	a0005	2850	3	2	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0006	1910	2	1	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0007	3086	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0008	3086	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0009	7554	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0010	5202	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0011	2380	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0012	1910	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0013	3320	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0014	3320	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0015	3320	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0016	2380	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0017	3320	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0018	2570	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	a0019	3320	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HROB_chr17_44136930_44167476	0/0	a0001	646	182	58	29	82	4	9	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	1/1	a0002	646	117	11	28	53	6	17	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	a0003	646	7	0	0	7	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	a0004	646	6	6	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	a0005	646	5	5	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	a0006	646	1	0	1	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	a0007	646	1	1	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	a0008	646	1	0	0	1	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	a0009	646	1	1	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476