JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HROB_chr17_44136930_44167476	0/0	a0010	646	1	0	0	1	0	0	copy fasta	HROB	chr17	44136930	44167476
HRURF_chr8_22125458_22136010	1/1	a0001	34	408	100	82	160	16	48	copy fasta	HRURF	chr8	22125458	22136010
HR_chr8_22109419_22136010	1/1	a0001	1189	206	38	59	78	11	18	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0002	1189	112	6	13	72	2	19	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0003	1189	15	13	2	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0004	1189	9	6	3	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0005	1189	7	0	0	0	0	7	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0006	1189	6	2	2	2	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0007	1189	6	6	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0008	1189	6	6	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0009	1189	5	5	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0010	1189	4	4	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0011	1189	4	0	1	0	3	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0012	1189	3	3	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0013	1189	2	2	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0014	1189	2	0	1	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0015	1189	2	2	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0016	1189	2	0	0	0	2	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0017	1189	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0018	1189	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0019	1189	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0020	1189	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0021	1189	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0022	1189	1	0	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0023	1189	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0024	1189	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0025	1189	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0026	1189	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0027	1189	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0028	1189	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0029	1189	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0030	1189	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0031	1189	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0032	1189	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	a0033	1189	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HS1BP3_chr2_20612818_20656098	1/0	a0001	392	236	53	53	97	7	25	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/1	a0002	392	89	19	21	35	5	8	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0003	392	58	9	6	29	2	12	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0004	392	8	8	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0005	392	4	0	0	4	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0006	392	4	1	1	0	2	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0007	392	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0008	392	1	0	1	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0009	392	1	0	0	1	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0010	392	1	0	0	0	0	1	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	a0011	392	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS2ST1_chr1_86909635_87114982	1/1	a0001	356	151	85	22	14	8	20	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	a0002	356	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	a0003	356	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	a0004	356	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982