JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HS3ST1_chr4_11388150_11433894	1/1	a0001	307	427	86	80	197	18	44	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	a0002	307	12	10	2	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	a0003	307	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST2_chr16_22809162_22921338	1/1	a0001	367	341	91	73	123	12	40	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	a0002	367	2	0	0	2	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	a0003	367	2	0	2	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	a0004	367	2	0	1	0	0	1	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	a0005	367	1	0	0	0	0	1	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	a0006	367	1	0	0	1	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	a0007	367	1	1	0	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST3A1_chr17_13489032_13606929	1/1	a0001	406	302	90	57	107	13	33	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	a0002	406	21	0	0	16	0	5	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	a0003	406	10	0	0	10	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	a0004	406	2	0	1	0	1	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	a0005	406	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	a0006	406	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	a0007	406	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3B1_chr17_14296081_14354404	1/1	a0001	390	407	86	72	190	14	43	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	a0002	390	7	0	0	0	2	5	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	a0003	390	6	6	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	a0004	390	5	0	2	3	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	a0005	390	3	3	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	a0006	390	2	0	0	2	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	a0007	357	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	a0008	390	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST4_chr16_25686959_26142685	0/0	a0001	456	147	40	32	44	8	23	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	a0002	456	9	8	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	a0003	456	5	5	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	a0004	456	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	a0005	456	1	0	0	0	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	a0006	456	1	0	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST5_chr6_114050596_114348023	1/1	a0001	346	206	72	52	50	8	22	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST6_chr16_1906475_1923415	0/1	a0001	342	184	18	30	108	3	24	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0002	342	172	34	38	79	9	12	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0003	342	36	19	12	2	2	1	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0004	342	14	14	0	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0005	342	13	7	0	1	0	5	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0006	342	3	0	0	3	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0007	342	3	0	0	3	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0008	342	2	2	0	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0009	342	2	0	2	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0010	342	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0011	342	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0012	342	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	a0013	342	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS6ST1_chr2_128260480_128323868	1/1	a0001	411	283	89	66	83	11	32	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	a0002	411	9	0	0	3	3	3	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	a0003	411	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	a0004	411	1	0	0	0	0	1	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST2_chrX_132621015_132963629	0/0	a0001	645	197	52	26	82	11	26	copy fasta	HS6ST2	chrX	132621015	132963629