JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HS6ST2_chrX_132621015_132963629	0/0	a0002	645	2	0	1	0	0	1	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	a0003	645	1	0	0	0	0	1	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	a0004	165	1	0	0	1	0	0	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST3_chr13_96085107_96844562	0/0	a0001	471	112	47	21	33	6	5	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	a0002	471	3	0	1	1	0	1	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	a0003	471	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HSBP1L1_chr18_79959643_79975822	0/1	a0001	74	333	56	59	158	14	45	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	1/0	a0002	74	77	37	13	21	2	3	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	a0003	74	1	1	0	0	0	0	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	a0004	74	1	0	0	1	0	0	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1_chr16_83802978_83824737	1/1	a0001	76	468	96	82	222	18	48	copy fasta	HSBP1	chr16	83802978	83824737
HSCB_chr22_28737039_28762510	1/1	a0001	235	399	80	70	188	14	45	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	a0002	235	4	0	0	3	0	1	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	a0003	235	4	4	0	0	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	a0004	235	1	1	0	0	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	a0005	235	1	1	0	0	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	a0006	235	1	0	0	1	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSD11B1L_chr19_5676027_5693522	1/1	a0001	286	379	85	84	148	14	46	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	a0002	286	2	2	0	0	0	0	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	a0003	286	1	1	0	0	0	0	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1_chr1_209699846_209739929	1/1	a0001	292	400	84	64	202	14	34	copy fasta	HSD11B1	chr1	209699846	209739929
HSD11B2_chr16_67426121_67442553	1/1	a0001	405	283	94	48	99	13	27	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	a0002	405	2	0	0	2	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	a0003	405	1	0	0	0	1	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	a0004	405	1	1	0	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	a0005	405	1	0	0	0	0	1	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	a0006	405	1	1	0	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	a0007	405	1	0	0	1	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD17B10_chrX_53426261_53439370	0/0	a0000	0	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	1/1	a0001	261	277	60	48	128	9	30	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	0/0	a0002	224	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	0/0	a0003	67	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B11_chr4_87331515_87396188	1/0	a0001	300	386	99	70	166	14	36	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/1	a0002	300	4	1	0	0	0	2	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B12_chr11_43675738_43861615	1/0	a0001	312	176	49	30	58	11	27	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/1	a0002	312	98	34	24	27	5	7	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	a0003	312	3	3	0	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	a0004	312	2	0	2	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	a0005	312	1	0	0	1	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B13_chr4_87298794_87327882	1/1	a0001	300	398	63	71	204	17	41	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	a0002	198	28	27	1	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	a0003	300	6	2	3	0	1	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	a0004	149	3	3	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	a0005	300	2	2	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	a0006	300	2	0	0	2	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	a0007	300	1	0	0	0	0	1	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	a0008	300	1	1	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	a0009	300	1	0	1	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B14_chr19_48808018_48841491	1/1	a0001	270	267	37	49	134	11	34	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	a0002	270	118	57	23	23	5	10	copy fasta	HSD17B14	chr19	48808018	48841491