JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSD17B14_chr19_48808018_48841491	0/0	a0003	270	3	0	3	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	a0004	270	2	2	0	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	a0005	270	1	1	0	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	a0006	78	1	1	0	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	a0007	270	1	0	0	1	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	a0008	270	1	0	1	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B1_chr17_42547923_42560214	0/0	a0000	0	1	1	0	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	a0001	328	216	39	40	98	9	30	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	1/1	a0002	328	203	49	36	92	9	15	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	a0003	328	1	1	0	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	a0004	328	1	0	0	0	0	1	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B2_chr16_82030253_82103534	0/0	a0000	0	20	7	1	12	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	1/1	a0001	387	336	79	48	157	12	38	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	a0002	387	4	4	0	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	a0003	387	2	2	0	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	a0004	387	1	0	1	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	a0005	387	1	0	1	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	a0006	387	1	0	1	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	a0007	387	1	0	0	1	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B3_chr9_96230306_96307176	1/1	a0001	310	294	69	64	109	11	39	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	a0002	310	58	5	7	39	1	6	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	a0003	310	15	0	0	11	0	4	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	a0004	310	2	0	1	1	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	a0005	310	1	0	0	1	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	a0006	310	1	0	0	0	0	1	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	a0007	310	1	0	1	0	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	a0008	310	1	0	0	1	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	a0009	310	1	0	1	0	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B4_chr5_119447497_119547332	1/0	a0001	736	169	36	30	80	6	16	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/1	a0002	736	93	4	13	59	8	8	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0003	736	42	11	9	19	0	3	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0004	736	38	23	7	1	2	5	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0005	736	10	0	0	10	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0006	736	6	6	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0007	736	6	6	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0008	736	5	3	2	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0009	736	5	0	2	2	0	1	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0010	736	2	0	2	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0011	736	1	0	1	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0012	736	1	1	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0013	736	1	0	0	0	0	1	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	a0014	736	1	0	0	1	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B6_chr12_56758324_56792790	1/1	a0001	317	358	92	72	138	18	36	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	a0002	317	1	0	0	0	0	1	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	a0003	317	1	0	0	0	0	1	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B7_chr1_162785702_162817823	1/1	a0001	341	360	79	73	151	15	40	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	a0002	341	44	11	4	26	1	2	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	a0003	341	14	0	0	14	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	a0004	341	1	0	0	1	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	a0005	341	1	0	1	0	0	0	copy fasta	HSD17B7	chr1	162785702	162817823