Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALMS1_chr2_73380836_73614916	0/0	a0020	4165	2	0	1	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0021	4166	2	2	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0022	4166	2	0	0	2	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0023	4167	2	0	1	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0024	4163	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0025	4163	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0026	4166	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0027	4166	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0028	4166	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0029	4165	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0030	4165	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0031	4165	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0032	4165	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0033	4165	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0034	4165	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0035	4165	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0036	4165	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0037	4165	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0038	4165	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0039	4165	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0040	4165	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0041	4165	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0042	4166	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0043	4167	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0044	4167	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0045	4167	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0046	4167	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0047	4167	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0048	4168	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	1/0	a0049	4168	1	0	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0050	4169	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0051	4169	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0052	4169	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0053	4169	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0054	4169	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0055	4169	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0056	4169	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0057	4169	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0058	4170	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	a0059	4172	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALOX12B_chr17_8067636_8092716	1/1	a0001	701	453	93	87	211	18	42	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	a0002	701	4	0	0	4	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	a0003	701	1	0	1	0	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	a0004	701	1	0	0	1	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	a0005	701	1	0	0	0	0	1	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	a0006	701	1	0	0	0	0	1	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	a0007	701	1	1	0	0	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12_chr17_6991049_7015754	0/1	a0001	663	250	64	52	99	8	26	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	a0002	663	125	8	18	77	5	17	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	1/0	a0003	663	22	13	4	3	0	1	copy fasta	ALOX12	chr17	6991049	7015754