JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSF4_chr16_67159745_67174941	0/0	a0003	492	1	0	0	1	0	0	copy fasta	HSF4	chr16	67159745	67174941
HSF5_chr17_58415167_58493408	1/1	a0001	596	266	77	54	95	9	29	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	a0002	596	57	0	12	37	3	5	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	a0003	598	3	1	2	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	a0004	596	1	0	0	0	0	1	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	a0005	596	1	0	1	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	a0006	596	1	0	0	1	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	a0007	596	1	0	0	1	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	a0008	596	1	0	1	0	0	0	copy fasta	HSF5	chr17	58415167	58493408
HSF5_chr17_58415167_58493408	0/0	a0009	596	1	0	0	0	0	1	copy fasta	HSF5	chr17	58415167	58493408
HSFX1_chrX_149769068_149781867	0/0	a0001	423	190	44	37	77	4	28	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0002	423	48	7	11	21	6	3	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0003	423	2	0	0	2	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0004	115	1	0	0	0	0	1	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0005	423	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0006	280	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0007	423	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0008	423	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0009	423	1	0	0	0	0	1	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0010	423	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0011	423	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0012	423	1	0	0	0	1	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0013	423	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0014	423	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0015	82	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	a0016	423	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX2_chrX_149587512_149600314	0/0	a0000	0	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0001	423	246	55	48	108	9	26	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0002	423	7	7	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0003	423	4	4	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0004	423	3	2	1	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0005	423	3	0	0	3	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0006	423	2	0	0	2	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0007	58	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0008	423	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0009	423	1	1	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0010	423	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0011	423	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0012	423	1	0	0	0	0	1	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0013	423	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0014	280	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0015	276	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0016	423	1	1	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0017	187	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0018	156	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	a0019	149	1	0	1	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX3_chrX_149543210_149554924	1/1	a0001	333	316	68	57	146	13	30	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	a0002	333	4	0	0	0	0	4	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	a0003	333	3	3	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	a0004	333	3	2	1	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924