JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSPA12B_chr20_3727685_3758111	0/0	a0009	686	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0010	686	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0011	686	1	0	0	0	0	1	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0012	686	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0013	686	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	a0014	686	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA13_chr21_14366115_14388146	1/1	a0001	471	402	97	68	177	12	46	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	a0002	471	3	0	0	3	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	a0003	471	1	0	0	1	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	a0004	471	1	0	0	1	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	a0005	471	1	1	0	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA14_chr10_14833306_14876741	1/1	a0001	509	369	93	56	172	8	38	copy fasta	HSPA14	chr10	14833306	14876741
HSPA14_chr10_14833306_14876741	0/0	a0002	509	2	0	0	0	0	2	copy fasta	HSPA14	chr10	14833306	14876741
HSPA14_chr10_14833306_14876741	0/0	a0003	509	2	0	2	0	0	0	copy fasta	HSPA14	chr10	14833306	14876741
HSPA14_chr10_14833306_14876741	0/0	a0004	509	1	1	0	0	0	0	copy fasta	HSPA14	chr10	14833306	14876741
HSPA1A_chr6_31810543_31822942	0/0	a0000	0	1	0	0	1	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/1	a0001	641	326	50	69	155	14	37	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	a0002	641	87	42	16	17	3	9	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	a0003	641	2	0	0	0	0	2	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	a0004	641	2	0	1	0	1	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	a0005	350	1	0	0	1	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1B_chr6_31822738_31835254	0/1	a0001	641	372	73	77	159	17	45	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	a0002	641	34	14	3	15	1	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	a0003	641	13	11	2	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	a0004	624	1	0	1	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	a0005	641	1	0	1	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1L_chr6_31804619_31820283	0/0	a0001	641	230	76	57	66	9	22	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/1	a0002	641	123	1	20	77	8	16	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	a0003	641	47	1	5	33	1	7	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	a0004	641	20	11	2	6	0	1	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	a0005	641	5	1	0	4	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	a0006	641	2	0	0	2	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	a0007	641	1	0	0	1	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	a0008	641	1	0	0	1	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA2_chr14_64535741_64548237	1/1	a0001	639	368	89	68	156	13	40	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	a0002	639	7	0	2	0	1	4	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	a0003	639	1	1	0	0	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA4L_chr4_127777322_127845733	0/0	a0001	839	236	70	31	117	4	14	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	1/0	a0002	839	97	16	15	51	5	9	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/1	a0003	839	6	0	4	0	1	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	a0004	839	1	0	0	0	0	1	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4_chr5_133047013_133111449	1/1	a0001	840	349	82	68	153	12	32	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	a0002	840	4	1	2	0	0	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	a0003	840	3	0	0	0	0	3	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	a0004	840	2	2	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	a0005	840	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	a0006	840	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	a0007	840	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	a0008	840	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	a0009	840	1	0	0	0	1	0	copy fasta	HSPA4	chr5	133047013	133111449