JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSPA4_chr5_133047013_133111449	0/0	a0010	840	1	0	0	0	1	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA5_chr9_125229853_125246343	1/1	a0001	654	400	92	60	186	18	42	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	a0002	654	3	0	0	3	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	a0003	654	1	0	0	1	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA6_chr1_161519540_161531894	1/1	a0001	643	366	82	61	167	16	38	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0002	643	66	0	3	56	0	7	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0003	643	11	4	4	3	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0004	643	7	7	0	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0005	643	1	0	1	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0006	436	1	0	0	0	0	1	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0007	643	1	0	0	1	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0008	643	1	0	1	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0009	643	1	1	0	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	a0010	643	1	0	0	1	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA8_chr11_123052489_123067136	1/1	a0001	646	422	92	78	186	16	48	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	a0002	646	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	a0003	263	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA9_chr5_138548756_138580401	1/1	a0001	679	301	92	66	91	10	40	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	a0002	679	1	0	0	1	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPB1_chr7_76297673_76309292	0/0	a0001	205	415	97	72	188	16	42	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	a0002	205	1	1	0	0	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	a0003	205	1	0	0	1	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	a0004	205	1	0	0	1	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB2_chr11_111907734_111919093	1/1	a0001	182	392	92	78	169	8	43	copy fasta	HSPB2	chr11	111907734	111919093
HSPB2_chr11_111907734_111919093	0/0	a0002	182	1	0	0	0	0	1	copy fasta	HSPB2	chr11	111907734	111919093
HSPB2_chr11_111907734_111919093	0/0	a0003	182	1	0	0	1	0	0	copy fasta	HSPB2	chr11	111907734	111919093
HSPB3_chr5_54450699_54461377	1/1	a0001	150	458	91	80	219	18	48	copy fasta	HSPB3	chr5	54450699	54461377
HSPB3_chr5_54450699_54461377	0/0	a0002	150	3	3	0	0	0	0	copy fasta	HSPB3	chr5	54450699	54461377
HSPB3_chr5_54450699_54461377	0/0	a0003	150	1	0	0	1	0	0	copy fasta	HSPB3	chr5	54450699	54461377
HSPB6_chr19_35749566_35762029	1/1	a0001	160	409	94	71	182	14	46	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	a0002	160	2	1	1	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	a0003	160	2	0	2	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	a0004	160	1	1	0	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB7_chr1_16009029_16023043	1/1	a0001	170	381	90	68	161	16	44	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	a0002	170	3	3	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	a0003	170	2	1	1	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	a0004	170	2	0	2	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	a0005	170	1	0	1	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	a0006	170	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	a0007	170	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	a0008	170	1	0	0	1	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB8_chr12_119173931_119199746	1/1	a0001	196	417	93	78	196	12	36	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	a0002	196	1	1	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB9_chr17_42117804_42128352	1/1	a0001	159	185	21	43	85	10	24	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	a0002	159	126	56	18	32	8	12	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	a0003	159	13	6	0	5	0	2	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	a0004	159	5	5	0	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	a0005	159	2	0	0	0	0	2	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	a0006	98	1	1	0	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	a0007	159	1	1	0	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352