JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSPB9_chr17_42117804_42128352	0/0	a0008	21	1	0	1	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352
HSPBAP1_chr3_122734999_122798831	1/1	a0001	488	268	45	52	119	11	39	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	a0002	489	38	3	8	24	0	3	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	a0003	489	18	17	1	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	a0004	488	12	4	0	4	0	4	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	a0005	488	10	2	7	0	1	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	a0006	488	1	1	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	a0007	488	1	1	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	a0008	489	1	0	0	1	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	a0009	488	1	1	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBP1_chr19_55257223_55285110	0/0	a0001	362	202	62	37	78	5	20	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	1/1	a0002	359	105	30	22	18	9	24	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	a0003	362	2	0	0	2	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	a0004	362	1	0	1	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	a0005	362	1	0	0	1	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	a0006	362	1	0	0	1	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	a0007	359	1	1	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	a0008	359	1	1	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPD1_chr2_197481584_197504840	1/1	a0001	573	392	88	74	180	13	35	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	a0002	573	1	1	0	0	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	a0003	573	1	1	0	0	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	a0004	573	1	0	0	0	1	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	a0005	573	1	0	0	0	0	1	copy fasta	HSPD1	chr2	197481584	197504840
HSPE1_chr2_197495379_197508449	1/1	a0001	102	406	84	74	190	16	40	copy fasta	HSPE1	chr2	197495379	197508449
HSPG2_chr1_21817244_21942310	0/0	a0001	4391	136	21	31	73	0	11	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/1	a0002	4391	20	0	8	7	0	4	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0003	4391	12	0	0	11	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0004	4391	10	4	1	5	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	1/0	a0005	4391	5	4	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0006	4391	5	5	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0007	4391	5	4	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0008	4391	5	2	2	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0009	4391	5	4	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0010	4391	4	4	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0011	4391	4	1	3	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0012	4391	4	4	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0013	4391	4	0	0	4	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0014	4391	3	3	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0015	4391	3	2	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0016	4391	3	0	0	0	1	2	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0017	4391	3	0	2	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0018	4391	2	0	2	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0019	4391	2	0	0	2	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0020	4391	2	0	2	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0021	4391	2	2	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0022	4391	2	2	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0023	4391	2	0	2	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0024	4391	2	0	1	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0025	4391	2	2	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0026	4391	2	2	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310