JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSPG2_chr1_21817244_21942310	0/0	a0027	4391	2	0	1	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0028	4391	2	0	1	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0029	4391	2	2	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0030	4391	2	0	0	2	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0031	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0032	4391	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0033	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0034	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0035	4391	1	0	0	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0036	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0037	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0038	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0039	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0040	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0041	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0042	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0043	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0044	4391	1	0	0	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0045	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0046	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0047	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0048	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0049	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0050	4391	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0051	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0052	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0053	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0054	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0055	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0056	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0057	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0058	4391	1	0	0	0	1	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0059	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0060	4391	1	0	0	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0061	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0062	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0063	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0064	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0065	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0066	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0067	4391	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0068	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0069	4391	1	0	0	0	1	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0070	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0071	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0072	4391	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0073	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0074	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0075	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0076	4396	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310