JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HSPG2_chr1_21817244_21942310	0/0	a0077	4391	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0078	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0079	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0080	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0081	4391	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0082	4391	1	0	0	0	1	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	a0083	4391	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPH1_chr13_31129973_31166904	1/1	a0001	858	388	88	72	172	18	36	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	a0002	858	3	3	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	a0003	858	2	0	2	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	a0004	858	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	a0005	858	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	a0006	858	1	1	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HTATIP2_chr11_20358714_20388782	0/1	a0001	242	251	55	51	95	16	33	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	1/0	a0002	242	166	40	19	103	0	3	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	a0003	242	1	0	0	1	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	a0004	242	1	1	0	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	a0005	242	1	0	0	1	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATSF1_chrX_136492592_136517346	1/1	a0001	755	250	59	47	108	6	28	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	a0002	755	20	0	0	20	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	a0003	755	2	0	2	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	a0004	755	1	1	0	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	a0005	755	1	1	0	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	a0006	755	1	1	0	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	a0007	755	1	0	0	0	1	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTD2_chr3_58301520_58325193	1/1	a0001	168	362	89	79	138	10	44	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	a0002	168	4	4	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	a0003	168	1	0	1	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	a0004	168	1	1	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTN1_chr4_70045438_70063848	1/1	a0001	57	427	89	74	198	18	46	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	a0002	57	10	8	2	0	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	a0003	57	2	0	0	2	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	a0004	57	1	1	0	0	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN3_chr4_70023459_70041538	1/1	a0001	51	385	71	70	186	18	38	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	a0002	46	17	15	2	0	0	0	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	a0003	51	10	8	2	0	0	0	copy fasta	HTN3	chr4	70023459	70041538
HTR1A_chr5_63952874_63967445	1/1	a0001	422	413	98	79	176	16	42	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0002	422	8	0	0	8	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0003	422	6	0	0	6	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0004	422	2	0	1	0	1	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0005	422	2	0	0	2	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0006	422	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0007	422	1	0	1	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0008	422	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0009	422	1	0	0	0	1	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	a0010	422	1	0	1	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1B_chr6_77455924_77468491	1/1	a0001	390	441	96	67	218	18	40	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	a0002	390	2	0	2	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	a0003	390	1	0	0	0	0	1	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	a0004	390	1	0	0	0	0	1	copy fasta	HTR1B	chr6	77455924	77468491