JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HTR1B_chr6_77455924_77468491	0/0	a0005	390	1	0	1	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1D_chr1_23186895_23222502	1/1	a0001	377	348	85	69	148	10	34	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	a0002	377	3	3	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	a0003	377	2	0	0	2	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	a0004	377	2	0	0	0	0	2	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	a0005	377	1	0	1	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1E_chr6_86932528_87021679	1/1	a0001	365	292	68	41	143	8	30	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	a0002	365	5	0	0	5	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	a0003	365	1	1	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	a0004	365	1	1	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	a0005	365	1	0	1	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1F_chr3_87787706_87998839	1/1	a0001	366	249	73	46	94	10	24	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	a0002	366	1	1	0	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR2A_chr13_46826546_46902053	1/1	a0001	471	311	73	57	139	11	29	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	a0002	471	18	7	3	1	2	5	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	a0003	471	4	4	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	a0004	471	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	a0005	471	1	0	0	0	1	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	a0006	471	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2B_chr2_231103230_231130042	1/1	a0001	481	392	69	61	204	12	44	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0002	481	7	7	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0003	481	5	5	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0004	481	4	4	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0005	481	3	3	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0006	481	1	0	0	1	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0007	481	1	1	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0008	481	1	0	0	1	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0009	481	1	1	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	a0010	481	1	0	1	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2C_chrX_114579086_114915061	0/0	a0001	458	131	25	21	63	5	17	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	1/1	a0002	458	45	27	6	4	2	4	copy fasta	HTR2C	chrX	114579086	114915061
HTR3A_chr11_113970108_113995313	1/1	a0001	478	406	79	76	191	14	44	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	a0002	478	15	14	1	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	a0003	478	2	2	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	a0004	26	1	1	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	a0005	478	1	0	1	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	a0006	478	1	0	0	1	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	a0007	478	1	0	0	0	0	1	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	a0008	478	1	0	0	0	0	1	copy fasta	HTR3A	chr11	113970108	113995313
HTR3B_chr11_113899796_113954079	1/0	a0001	441	265	46	35	146	8	29	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/1	a0002	441	135	29	36	49	3	17	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	a0003	441	10	6	3	0	1	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	a0004	441	4	4	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	a0005	441	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	a0006	441	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	a0007	441	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	a0008	441	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3C_chr3_184048047_184065673	0/0	a0001	447	199	26	38	109	4	22	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	1/1	a0002	447	136	28	26	50	9	21	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0003	447	63	5	14	33	5	6	copy fasta	HTR3C	chr3	184048047	184065673