JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HTR3C_chr3_184048047_184065673	0/0	a0004	447	23	20	3	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0005	447	8	5	0	2	0	1	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0006	447	4	3	1	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0007	447	2	2	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0008	447	2	0	2	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0009	447	2	2	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0010	280	1	1	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0011	447	1	1	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	a0012	447	1	1	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3D_chr3_184026742_184044369	0/1	a0001	404	133	50	21	49	4	8	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0002	404	125	18	25	74	1	7	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0003	404	72	0	4	56	4	8	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	1/0	a0004	404	72	11	22	9	7	22	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0005	404	24	1	9	12	1	1	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0006	404	6	4	2	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0007	404	4	3	1	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0008	404	2	0	0	0	0	2	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0009	404	2	2	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0010	404	2	0	0	2	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0011	404	2	2	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0012	404	1	1	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0013	404	1	1	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0014	404	1	0	0	1	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0015	404	1	1	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0016	404	1	0	0	1	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	a0017	404	1	0	0	0	1	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3E_chr3_184092064_184111995	0/1	a0001	456	288	64	47	137	9	30	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	1/0	a0002	456	107	12	24	51	5	14	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0003	456	11	10	1	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0004	456	2	2	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0005	456	2	2	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0006	23	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0007	456	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0008	456	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0009	456	1	0	0	0	0	1	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0010	456	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0011	456	1	0	1	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0012	456	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0013	456	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0014	456	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0015	456	1	0	1	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0016	456	1	0	0	0	0	1	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	a0017	456	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR4_chr5_148476547_148659527	1/1	a0001	388	304	84	37	141	10	30	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	a0002	388	4	4	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	a0003	388	1	0	1	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	a0004	388	1	0	0	1	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR5A_chr7_155065324_155092392	1/1	a0001	357	417	96	71	191	16	41	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	a0002	357	11	0	7	0	2	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	a0003	357	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392