Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALOX12_chr17_6991049_7015754	0/0	a0004	663	2	2	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	a0005	663	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	a0006	663	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	a0007	652	1	0	0	1	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	a0008	663	1	0	0	0	1	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	a0009	663	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX15B_chr17_8034059_8054134	0/1	a0001	676	180	27	36	90	9	17	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	1/0	a0002	676	149	11	43	70	8	16	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0003	676	37	8	1	18	0	10	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0004	676	32	9	0	22	0	1	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0005	676	15	13	2	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0006	676	10	10	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0007	676	8	0	1	7	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0008	676	6	6	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0009	676	4	4	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0010	676	4	0	0	4	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0011	676	3	0	0	0	0	3	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0012	676	3	0	3	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0013	676	3	3	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0014	676	2	0	0	2	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0015	676	2	0	0	2	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0016	676	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0017	676	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0018	676	1	0	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0019	676	1	0	0	0	1	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0020	676	1	0	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0021	603	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0022	676	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0023	676	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0024	676	1	0	0	0	0	1	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0025	676	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0026	676	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	a0027	676	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15_chr17_4625919_4646678	1/1	a0001	662	434	90	76	210	14	42	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0002	662	10	0	6	0	0	4	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0003	662	7	1	6	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0004	662	6	6	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0005	662	4	0	0	4	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0006	662	2	2	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0007	66	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0008	662	1	1	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0009	662	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0010	662	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0011	662	1	0	0	0	0	1	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0012	662	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0013	662	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0014	662	1	0	0	0	0	1	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	a0015	662	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX5AP_chr13_30730543_30769426	1/1	a0001	161	422	88	78	190	16	48	copy fasta	ALOX5AP	chr13	30730543	30769426
ALOX5_chr10_45369216_45451117	0/1	a0001	674	321	86	53	136	14	31	copy fasta	ALOX5	chr10	45369216	45451117