JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HTR5A_chr7_155065324_155092392	0/0	a0004	357	1	0	0	0	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR6_chr1_19659875_19685966	1/1	a0001	440	391	88	79	168	12	42	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	a0002	440	4	4	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	a0003	440	3	3	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	a0004	440	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	a0005	440	1	0	1	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR7_chr10_90735823_90863039	1/1	a0001	479	387	83	65	189	8	40	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	a0002	479	14	11	3	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	a0003	479	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	a0004	479	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	a0005	479	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTRA1_chr10_122456553_122519907	1/1	a0001	480	314	85	70	110	16	31	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	a0002	480	43	0	1	36	0	6	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	a0003	480	3	2	0	0	0	1	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	a0004	480	1	1	0	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	a0005	480	1	0	1	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA2_chr2_74524933_74538319	1/1	a0001	458	387	98	72	182	8	25	copy fasta	HTRA2	chr2	74524933	74538319
HTRA2_chr2_74524933_74538319	0/0	a0002	458	3	0	0	0	0	3	copy fasta	HTRA2	chr2	74524933	74538319
HTRA2_chr2_74524933_74538319	0/0	a0003	458	2	0	0	0	0	2	copy fasta	HTRA2	chr2	74524933	74538319
HTRA3_chr4_8264754_8312098	1/0	a0001	453	370	90	67	150	15	47	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/1	a0002	453	9	3	4	0	1	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0003	28	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0004	453	1	0	1	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0005	453	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0006	453	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0007	453	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0008	453	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0009	453	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0010	453	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	a0011	453	1	0	0	0	0	1	copy fasta	HTRA3	chr4	8264754	8312098
HTRA4_chr8_38969228_38993663	1/1	a0001	476	411	89	81	174	18	47	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0002	476	5	0	0	5	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0003	476	4	4	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0004	476	2	1	1	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0005	476	1	1	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0006	476	1	1	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0007	476	1	0	0	0	0	1	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0008	476	1	0	0	1	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0009	476	1	0	0	1	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	a0010	476	1	0	0	1	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTT_chr4_3069681_3248957	0/0	a0001	3140	41	2	6	26	3	4	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0002	3143	40	0	9	25	1	5	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	1/0	a0003	3142	16	5	2	7	1	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0004	3139	13	7	1	5	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0005	3144	13	0	4	9	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0006	3141	10	0	3	6	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0007	3141	8	7	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0008	3143	8	3	2	3	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0009	3138	7	1	5	0	1	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0010	3141	6	5	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957