JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HTT_chr4_3069681_3248957	0/0	a0011	3143	5	0	0	5	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0012	3142	5	1	1	1	0	2	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0013	3140	4	0	3	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0014	3144	4	3	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0015	3144	4	2	2	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0016	3146	4	1	1	0	0	2	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0017	3140	3	2	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0018	3142	3	0	3	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0019	3138	3	3	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0020	3140	3	0	1	1	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0021	3144	3	0	0	3	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0022	3145	3	3	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0023	3145	3	2	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0024	3136	2	0	0	0	1	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0025	3138	2	0	2	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0026	3142	2	2	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0027	3135	2	2	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0028	3140	2	0	0	2	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0029	3140	2	0	0	2	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0030	3140	2	0	0	1	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0031	3144	2	0	0	0	2	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0032	3141	2	0	0	2	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0033	3141	2	1	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0034	3145	2	0	1	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0035	3142	2	2	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0036	3142	2	2	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0037	3148	2	1	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0038	3149	2	0	1	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0039	3151	2	0	2	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0040	3134	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0041	3136	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0042	3136	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0043	3138	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0044	3138	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0045	3137	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0046	3141	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0047	3141	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0048	3140	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0049	3142	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0050	3142	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0051	3142	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0052	3142	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0053	3142	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0054	3138	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0055	3139	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0056	3143	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0057	3143	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0058	3143	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0059	3143	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0060	3142	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957