JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HTT_chr4_3069681_3248957	0/0	a0061	3142	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0062	3140	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0063	3140	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0064	3140	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0065	3140	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0066	3140	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0067	3140	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0068	3139	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0069	3144	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0070	3144	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0071	3144	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0072	3142	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0073	3141	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0074	3141	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0075	3141	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0076	84	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0077	3145	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0078	3142	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0079	3142	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0080	3146	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0081	3146	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0082	3143	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0083	3147	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0084	3147	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0085	3147	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0086	3146	1	0	0	0	1	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0087	3150	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0088	3151	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0089	3149	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0090	3153	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/1	a0091	3151	1	0	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	a0092	108	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HUNK_chr21_31868020_32009064	1/1	a0001	714	239	85	40	82	8	22	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	a0002	714	80	4	13	46	4	13	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	a0003	714	2	2	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	a0004	714	2	1	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	a0005	714	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	a0006	714	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	a0007	714	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	a0008	714	1	0	0	0	0	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	a0009	714	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUS1B_chr6_650939_662100	0/1	a0001	278	291	34	64	145	12	35	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	1/0	a0002	278	53	45	3	3	1	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0003	278	50	2	6	34	1	7	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0004	278	22	1	5	13	2	1	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0005	278	3	3	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0006	278	2	2	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0007	70	1	0	1	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0008	278	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0009	200	1	0	0	0	0	1	copy fasta	HUS1B	chr6	650939	662100