JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HUS1B_chr6_650939_662100	0/0	a0010	278	1	0	1	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0011	278	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0012	270	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0013	278	1	0	0	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0014	278	1	0	0	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0015	278	1	0	0	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0016	278	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	a0017	278	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1_chr7_47958288_47984615	1/1	a0001	280	378	93	68	160	13	42	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	a0002	280	31	4	0	26	1	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	a0003	280	1	1	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUWE1_chrX_53527096_53691719	1/1	a0001	4374	209	41	41	89	11	25	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	a0002	4374	1	0	1	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	a0003	2109	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	a0004	4374	1	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	a0005	2328	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	a0006	4374	1	0	0	0	0	1	copy fasta	HUWE1	chrX	53527096	53691719
HVCN1_chr12_110643686_110694115	1/1	a0001	273	205	78	46	30	13	36	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	a0002	273	3	0	2	0	1	0	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	a0003	273	1	1	0	0	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	a0004	273	1	1	0	0	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HYAL1_chr3_50294893_50308574	1/1	a0001	435	356	80	67	157	14	36	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0002	435	10	0	0	10	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0003	435	4	0	0	0	2	2	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0004	435	3	3	0	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0005	435	3	3	0	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0006	435	2	2	0	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0007	435	2	0	0	1	0	1	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0008	71	1	0	0	1	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0009	435	1	0	0	1	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0010	435	1	0	1	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	a0011	435	1	0	0	0	0	1	copy fasta	HYAL1	chr3	50294893	50308574
HYAL2_chr3_50312808_50327745	0/1	a0001	473	170	58	38	47	8	18	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	a0002	473	101	19	18	63	0	1	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	1/0	a0003	473	81	10	14	32	10	14	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	a0004	473	1	1	0	0	0	0	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	a0005	473	1	0	0	0	0	1	copy fasta	HYAL2	chr3	50312808	50327745
HYAL3_chr3_50287832_50304405	1/1	a0001	417	281	68	35	136	12	28	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	a0002	417	92	16	37	26	4	9	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	a0003	417	3	3	0	0	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	a0004	417	1	0	0	0	0	1	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	a0005	417	1	1	0	0	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL4_chr7_123840169_123882481	1/0	a0001	481	329	82	55	146	10	35	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/1	a0002	42	31	0	12	18	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	a0003	481	25	14	5	0	1	5	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	a0004	481	3	0	1	0	0	2	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	a0005	147	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	a0006	162	1	0	0	0	1	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	a0007	481	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	a0008	481	1	0	1	0	0	0	copy fasta	HYAL4	chr7	123840169	123882481