JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HYAL4_chr7_123840169_123882481	0/0	a0009	481	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	a0010	481	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYCC1_chr7_22929211_23019130	1/1	a0001	521	376	77	69	173	13	42	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	a0002	521	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	a0003	521	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	a0004	521	2	0	0	2	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	a0005	521	1	0	0	0	1	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	a0006	521	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	a0007	521	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	a0008	521	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC2_chr2_200968718_201076671	1/1	a0001	586	175	85	38	24	10	16	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	a0002	586	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYDIN_chr16_70797084_71235722	0/1	a0001	5121	47	8	16	13	2	7	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0002	5121	35	11	7	10	3	4	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0003	5121	22	20	1	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0004	5121	7	0	1	6	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0005	5121	5	4	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0006	5121	5	1	2	1	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0007	5121	5	5	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0008	5121	3	3	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0009	5121	3	0	2	0	1	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0010	5121	2	0	0	2	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0011	5121	2	0	0	1	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0012	5121	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0013	5121	2	1	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0014	5121	2	0	2	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0015	5121	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0016	5121	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0017	5121	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0018	5121	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0019	5121	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0020	5121	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0021	5121	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0022	5121	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0023	5121	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0024	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0025	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0026	5121	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0027	5121	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0028	5121	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0029	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0030	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0031	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	1/0	a0032	5121	1	0	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0033	5121	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0034	5121	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0035	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0036	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0037	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0038	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722