JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HYDIN_chr16_70797084_71235722	0/0	a0039	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0040	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0041	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0042	5121	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0043	5121	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	a0044	5121	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYI_chr1_43445989_43458931	0/1	a0001	277	222	58	47	91	10	15	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	1/0	a0002	277	177	26	22	94	7	27	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0003	277	10	10	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0004	277	4	0	3	0	1	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0005	277	2	0	0	2	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0006	274	2	0	0	2	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0007	277	1	1	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0008	277	1	1	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0009	277	1	0	0	1	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0010	277	1	0	0	1	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	a0011	277	1	0	0	1	0	0	copy fasta	HYI	chr1	43445989	43458931
HYKK_chr15_78502577_78541645	1/1	a0001	373	395	87	59	195	11	41	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	a0002	373	11	1	7	0	1	2	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	a0003	373	2	2	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	a0004	194	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	a0005	373	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	a0006	373	1	0	0	0	0	1	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	a0007	373	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYLS1_chr11_125882668_125905646	1/1	a0001	299	299	65	56	141	8	27	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	a0002	299	131	28	18	63	6	16	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	a0003	299	3	3	0	0	0	0	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	a0004	299	2	0	0	0	0	2	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	a0005	299	1	0	0	0	0	1	copy fasta	HYLS1	chr11	125882668	125905646
HYOU1_chr11_119039188_119062205	1/1	a0001	999	396	99	64	174	15	42	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0002	999	5	0	0	5	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0003	999	4	0	0	4	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0004	999	3	1	2	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0005	999	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0006	999	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0007	999	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0008	999	1	0	0	0	1	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0009	999	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	a0010	999	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYPK_chr15_43795599_43809427	1/1	a0001	121	269	63	50	111	11	32	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	a0002	121	87	27	12	41	1	6	copy fasta	HYPK	chr15	43795599	43809427
IAH1_chr2_9469551_9494742	1/1	a0001	248	335	89	70	121	16	37	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	a0002	248	3	0	2	0	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	a0003	248	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	a0004	126	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	a0005	248	1	0	0	0	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	a0006	248	1	0	0	0	0	1	copy fasta	IAH1	chr2	9469551	9494742
IAPP_chr12_21367902_21384980	1/1	a0001	89	419	88	72	195	16	46	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	a0002	89	3	0	0	3	0	0	copy fasta	IAPP	chr12	21367902	21384980
IARS1_chr9_92205207_92298697	1/1	a0001	1262	270	74	50	105	12	27	copy fasta	IARS1	chr9	92205207	92298697