JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IARS1_chr9_92205207_92298697	0/0	a0002	1262	52	6	12	22	4	8	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0003	1262	3	0	2	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0004	1262	2	2	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0005	1262	2	2	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0006	1262	2	2	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0007	1262	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0008	1262	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0009	1262	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0010	1262	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0011	1262	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0012	1262	1	0	0	1	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	a0013	1262	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS2_chr1_220089132_220153041	1/1	a0001	1012	314	59	60	149	14	30	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0002	1012	19	11	1	4	0	3	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0003	1012	11	10	1	0	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0004	1012	10	0	0	7	0	3	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0005	1012	5	5	0	0	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0006	1012	2	0	0	2	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0007	1012	2	0	0	2	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0008	1012	1	0	0	1	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0009	1012	1	1	0	0	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	a0010	1012	1	0	0	1	0	0	copy fasta	IARS2	chr1	220089132	220153041
IBA57_chr1_228160804_228187257	1/1	a0001	356	238	75	28	118	4	11	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	a0002	356	114	12	20	54	6	22	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	a0003	356	56	3	22	14	6	11	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	a0004	356	2	2	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	a0005	356	2	0	0	2	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	a0006	356	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	a0007	356	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	a0008	356	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	a0009	356	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBSP_chr4_87794554_87817435	1/0	a0001	317	113	8	23	72	1	8	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0002	317	93	8	12	63	1	9	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0003	317	61	38	12	3	4	4	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/1	a0004	317	58	1	19	17	4	16	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0005	317	47	0	2	40	2	3	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0006	317	45	30	6	1	2	6	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0007	317	31	10	3	16	0	2	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0008	317	1	0	0	1	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0009	317	1	0	1	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0010	317	1	0	0	1	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0011	317	1	1	0	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0012	317	1	1	0	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	a0013	317	1	1	0	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBTK_chr6_82164987_82252744	1/1	a0001	1353	194	56	37	63	10	26	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	a0002	1353	93	21	19	41	2	10	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	a0003	1353	3	3	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	a0004	1353	3	3	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	a0005	1353	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	a0006	1353	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744