JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ICAM5_chr19_10284952_10301778	0/0	a0007	924	1	1	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICE1_chr5_5417677_5495220	0/1	a0001	2266	137	22	29	63	9	13	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	1/0	a0002	2266	101	12	13	59	7	9	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0003	2266	55	0	10	41	0	4	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0004	2266	15	14	1	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0005	2266	15	15	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0006	2266	9	9	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0007	2266	7	0	5	2	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0008	2266	4	3	1	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0009	2266	3	3	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0010	2266	2	2	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0011	2266	2	0	0	2	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0012	2266	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0013	2266	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0014	2266	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0015	2266	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0016	2266	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0017	2266	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0018	2266	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0019	2266	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0020	2266	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0021	2266	1	0	1	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0022	2266	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0023	2266	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0024	2266	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	a0025	2266	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE2_chr15_60414609_60484142	1/1	a0001	982	255	81	54	74	13	31	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0002	982	3	3	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0003	982	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0004	982	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0005	982	2	0	2	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0006	982	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0007	982	1	0	0	0	0	1	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0008	982	1	0	0	0	1	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0009	982	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0010	982	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	a0011	982	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICMT_chr1_6216193_6240964	1/1	a0001	284	346	95	57	138	14	40	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	a0002	284	4	3	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	a0003	284	2	0	0	2	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICOSLG_chr21_44217991_44245943	0/1	a0001	302	20	1	11	5	0	2	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	a0002	302	20	6	3	9	0	2	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	a0003	302	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOS_chr2_203931763_203966577	1/1	a0001	199	421	82	76	195	18	48	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	a0002	199	8	8	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	a0003	199	1	0	0	1	0	0	copy fasta	ICOS	chr2	203931763	203966577
ID1_chr20_31600289_31611510	1/1	a0001	155	290	85	68	89	12	34	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	a0002	155	7	1	6	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	a0003	155	1	0	0	1	0	0	copy fasta	ID1	chr20	31600289	31611510
ID2_chr2_8677056_8689461	1/1	a0001	134	394	96	72	162	16	46	copy fasta	ID2	chr2	8677056	8689461